Mir-33-P1

MirGeneDB ID

Xtr-Mir-33-P1

Family name

MIR-33 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-33a

Paralogues

Xtr-Mir-33-P3

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Aga-Mir-33 Ami-Mir-33-P1 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cin-Mir-33 Cja-Mir-33-P1 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P1 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P1 Isc-Mir-33 Laf-Mir-33-P1 Lch-Mir-33-P1 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mal-Mir-33-P1b Mgi-Mir-33 Mml-Mir-33-P1 Mmr-Mir-33-P1 Mom-Mir-33 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P1 Pau-Mir-33 Pbv-Mir-33-P1 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Tni-Mir-33-P1a Tni-Mir-33-P1b War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr9: 9608388-9608447 [+] UCSC Ensembl

Seed

UGCAUUG

Precursor
(pre-Mir +30nt flank)

GAGGUGCACGUAGAUAUGACUGCCGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUGAUAUCAGCGGUGUGCAAUGUGCCUGCAGUGCAACACAGAGGUAGUGCCGGAUCUGCAGCGAGAGA

Get precursor sequence

Structure

        10          20        30        40        50         
GAGGUGCACGUAGAUAUG--|     G     G          UU        UGUGAUA 
                    ACUGCC CUGUG UGCAUUGUAG  GCAUUGCA       U
                    UGAUGG GACAC ACGUGACGUC  UGUAACGU       C
AGAGAGCGACGUCUAGGCCG^     A     A          CG        GUGGCGA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-33-P1_5p

mirBase accession

MIMAT0003680

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

Get sequence

Proposed targets

TargetScanVert: xtr-miR-33a

Star sequence

Xtr-Mir-33-P1_3p*

mirBase accession

None

Sequence

39- CAAUGUGCCUGCAGUGCAACA -60

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