MirGeneDB ID | Spt-Mir-33-P1 |
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Family name | MIR-33 (all species) |
Seed | UGCAUUG |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | Spt-Mir-33-P3 |
Orthologues | Aae-Mir-33 Aca-Mir-33-P1 Ami-Mir-33-P1 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cgi-Mir-33 Cin-Mir-33 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Ebu-Mir-33 Efe-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Hsa-Mir-33-P1 Isc-Mir-33 Lch-Mir-33-P1 Lgi-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mal-Mir-33-P1b Mml-Mir-33-P1 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ovu-Mir-33 Pbv-Mir-33-P1 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Tni-Mir-33-P1a Tni-Mir-33-P1b Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d Xtr-Mir-33-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01010859.1: 15243921-15243979 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | UGGGGGGCGCGGGCGGUGGCUGUGGCGGGGGUGCAUUGUGGUUGCAUUGCAUGUGUGGUUGAAGAGUGCAAUGCCCCUGCAGUGCAGCCCUGAGGCAGCUCCUUCCAGCUUGGGGCUCCGet precursor sequence |
Structure | 10 20 30 40 50 UGGGGGGCGCGGGCGGU--| GG G UG UU UGUGUGG GGCUGU CGGGG UGCAUUG G GCAUUGCA \ UCGACG GUCCC ACGUGAC C CGUAACGU U CCUCGGGGUUCGACCUUCC^ GA G GU CC GAGAAGU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Mature sequence | Spt-Mir-33-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- GUGCAUUGUGGUUGCAUUGCA -21
Get sequence
|
Star sequence | Spt-Mir-33-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
38- CAAUGCCCCUGCAGUGCAGCC -59
Get sequence
|