Mir-33-P1d

MirGeneDB ID

Xla-Mir-33-P1d

Family name

MIR-33 (all species)

Seed

UGCAUUG

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-33a

Paralogues

Xla-Mir-33-P1c Xla-Mir-33-P3a Xla-Mir-33-P3b

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Ami-Mir-33-P1 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cgi-Mir-33 Cin-Mir-33 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Ebu-Mir-33 Efe-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Hsa-Mir-33-P1 Isc-Mir-33 Lch-Mir-33-P1 Lgi-Mir-33 Loc-Mir-33-P1 Mml-Mir-33-P1 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ovu-Mir-33 Pbv-Mir-33-P1 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Xbo-Mir-33 Xtr-Mir-33-P1

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030741.1: 99915860-99915919 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAGGUGCAAGUAGAUGGAACUGUGGCUGCGGUGCAUUGUAGUUGCAUUGCAUGUGAUAUCGGUGAUGUGCAAUGUGCCUGCAGUGCAACACAGAGGCAGUGCCGGAUCUUCAAUACAGAA

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Structure

        10          20        30        40        50         
CAGGUGCAAGUAGAUGGA--|    GG   CGG          UU        UGUGAUA 
                    ACUGU  CUG   UGCAUUGUAG  GCAUUGCA       U
                    UGACG  GAC   ACGUGACGUC  UGUAACGU       C
AAGACAUAACUUCUAGGCCG^    GA   ACA          CG        GUAGUGG 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-33-P1d_5p

mirBase accession

MIMAT0046580

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

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Star sequence

Xla-Mir-33-P1d_3p* (predicted)

mirBase accession

MIMAT0046581

Sequence

39- CAAUGUGCCUGCAGUGCAACA -60

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