MirGeneDB ID | Gga-Mir-33-P1 |
Family name |
MIR-33 (all species) |
Seed |
UGCAUUG |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-33-2
|
Paralogues |
Gga-Mir-33-P3
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P1
Ami-Mir-33-P1
Bge-Mir-33
Bta-Mir-33-P1
Cfa-Mir-33-P1
Cgi-Mir-33
Cin-Mir-33
Cli-Mir-33-P1
Cmi-Mir-33-P1
Cpi-Mir-33-P1
Cpo-Mir-33-P1
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P1
Dpu-Mir-33
Dre-Mir-33-P1a
Dsi-Mir-33
Dya-Mir-33
Ebu-Mir-33
Efe-Mir-33
Esc-Mir-33
Ete-Mir-33-P1
Gja-Mir-33-P1
Gmo-Mir-33-P1a
Gmo-Mir-33-P1b
Hsa-Mir-33-P1
Isc-Mir-33
Lch-Mir-33-P1
Lgi-Mir-33
Loc-Mir-33-P1
Mal-Mir-33-P1a
Mal-Mir-33-P1b
Mml-Mir-33-P1
Mun-Mir-33-P1
Npo-Mir-33
Oan-Mir-33-P1
Obi-Mir-33
Ocu-Mir-33-P1
Ovu-Mir-33
Pbv-Mir-33-P1
Pfl-Mir-33
Pma-Mir-33-o1
Pmi-Mir-33
Sko-Mir-33
Spt-Mir-33-P1
Spu-Mir-33
Sto-Mir-33-P1
Tca-Mir-33
Tgu-Mir-33-P1
Tni-Mir-33-P1a
Tni-Mir-33-P1b
Xbo-Mir-33
Xla-Mir-33-P1c
Xla-Mir-33-P1d
Xtr-Mir-33-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
14: 5309753-5309812 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCACGGGAGGCGUCCCCGGCCCUCGCGGGGGUGCAUUGUAGUUGCAUUGCAUGUGUCAGACUGGGAGUGCAAUGCCCCUGCCAUGCAGCCCGGCGGGGGUCCCGCGCAGCGCCCGCCUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
UCACGGGAGGCGUCCCC--| G G U UU UGUGUCA
GGCCCUCGC GGG UGCAU GUAG GCAUUGCA G
CUGGGGGCG CCC ACGUA CGUC CGUAACGU A
CGUCCGCCCGCGACGCGCC^ G G C CC GAGGGUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Ch |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Mature sequence |
Gga-Mir-33-P1_5p |
mirBase accession | MIMAT0037539 |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Star sequence |
Gga-Mir-33-P1_3p* |
mirBase accession | None |
Sequence |
39- CAAUGCCCCUGCCAUGCAGCC -60
Get sequence
|