Mir-33-P1

MirGeneDB ID

Gja-Mir-33-P1

Family name

MIR-33 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-33-P3

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Aga-Mir-33 Ami-Mir-33-P1 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cin-Mir-33 Cja-Mir-33-P1 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P1 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P1 Isc-Mir-33 Laf-Mir-33-P1 Lch-Mir-33-P1 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mal-Mir-33-P1b Mgi-Mir-33 Mml-Mir-33-P1 Mmr-Mir-33-P1 Mom-Mir-33 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P1 Pau-Mir-33 Pbv-Mir-33-P1 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Tni-Mir-33-P1a Tni-Mir-33-P1b War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d Xtr-Mir-33-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015177012.1: 59654-59713 [+]

Seed

UGCAUUG

Precursor
(pre-Mir +30nt flank)

CGUGGCGUGGCCGAUGUGGCAGUGGCGGGGGUGCAUUGUAGUUGCAUUGCAUGUGCAGCCAGAGAUGUGCAAUGCCCCUCCAAUGCAGCCCCGAGGCAGCCCCCCCCCACAGCUGAAAGC

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Structure

        10          20        30        40        50         
CGUGGCGUGGCCGAUGU--|  A  GG     G       U  UU        UGUGCAG 
                   GGC GU  CGGGG UGCAUUG AG  GCAUUGCA       C
                   CCG CG  GCCCC ACGUAAC UC  CGUAACGU       C
CGAAAGUCGACACCCCCCC^  A  GA     G       C  CC        GUAGAGA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Gja-Mir-33-P1_5p

mirBase accession

None

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

Get sequence

Star sequence

Gja-Mir-33-P1_3p* (predicted)

mirBase accession

None

Sequence

39- CAAUGCCCCUCCAAUGCAGCC -60

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