MirGeneDB ID | Xla-Mir-33-P1c |
Family name |
MIR-33 (all species) |
Seed |
UGCAUUG |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-33-P1d
Xla-Mir-33-P3a
Xla-Mir-33-P3b
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P1
Ami-Mir-33-P1
Bge-Mir-33
Bta-Mir-33-P1
Cfa-Mir-33-P1
Cgi-Mir-33
Cin-Mir-33
Cli-Mir-33-P1
Cmi-Mir-33-P1
Cpi-Mir-33-P1
Cpo-Mir-33-P1
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P1
Dpu-Mir-33
Dsi-Mir-33
Dya-Mir-33
Ebu-Mir-33
Efe-Mir-33
Esc-Mir-33
Ete-Mir-33-P1
Gga-Mir-33-P1
Gja-Mir-33-P1
Hsa-Mir-33-P1
Isc-Mir-33
Lch-Mir-33-P1
Lgi-Mir-33
Loc-Mir-33-P1
Mml-Mir-33-P1
Mun-Mir-33-P1
Npo-Mir-33
Oan-Mir-33-P1
Obi-Mir-33
Ocu-Mir-33-P1
Ovu-Mir-33
Pbv-Mir-33-P1
Pfl-Mir-33
Pma-Mir-33-o1
Pmi-Mir-33
Sko-Mir-33
Spt-Mir-33-P1
Spu-Mir-33
Sto-Mir-33-P1
Tca-Mir-33
Tgu-Mir-33-P1
Xbo-Mir-33
Xtr-Mir-33-P1
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030740.1: 111938572-111938631 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGGUGCAAAUAGAUAGAACUGUGGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUGAUAUCGGUGAUGUGCAAUGUGCCCUCAGUGCAGCACAGAGGCAGAGCCAAAUCUUCAGCACAACA
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGGUGCAAAUAGAUAGAA--| GG G U UU- UGUGAUA
CUGU CUGUG UGCAUUG AG GCAUUGCA U
GACG GACAC ACGUGAC UC UGUAACGU C
ACAACACGACUUCUAAACCGA^ GA G - CCG GUAGUGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xla-Mir-33-P1c_5p |
mirBase accession | None |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Star sequence |
Xla-Mir-33-P1c_3p* |
mirBase accession | None |
Sequence |
39- CAAUGUGCCCUCAGUGCAGCA -60
Get sequence
|