MirGeneDB ID | Lch-Mir-33-P1 |
---|---|
Family name | MIR-33 (all species) |
Seed | UGCAUUG |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-33-P3 |
Orthologues | Aae-Mir-33 Aca-Mir-33-P1 Ami-Mir-33-P1 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cgi-Mir-33 Cin-Mir-33 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Ebu-Mir-33 Efe-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Hsa-Mir-33-P1 Isc-Mir-33 Lgi-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mal-Mir-33-P1b Mml-Mir-33-P1 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ovu-Mir-33 Pbv-Mir-33-P1 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Tni-Mir-33-P1a Tni-Mir-33-P1b Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d Xtr-Mir-33-P1 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
BAHO01271459.1: 1204-1263 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UAGGACGGAGGAGGUCUAGCUGCAGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUGUCUGUCAGGUUGUGCAAUGCACCUGCAAUGCAAUACGGAGUCUGGCUAUAAGCAUCAAUCAAAAUGet precursor sequence |
Structure | 10 20 30 40 50 UAGGACGGAGGAGGUCU- GCAG-| G U UGUGUCU AGCU CUGUG UGCAUUGUAG UGCAUUGCA G UCGG GGCAU ACGUAACGUC ACGUAACGU U UAAAACUAACUACGAAUA UCUGA^ A C GUUGGAC . 110 100 90 80 70 60 |
Deep sequencing | |
Comment | Not in assembly but in trace archive. |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Lch-Mir-33-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Star sequence | Lch-Mir-33-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
39- CAAUGCACCUGCAAUGCAAUA -60
Get sequence
|