MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-33-P1a

Family name MIR-33 (all species)
Seed AAUGUUC
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues
Orthologues Aae-Mir-33  Aca-Mir-33-P1  Ami-Mir-33-P1  Bge-Mir-33  Bta-Mir-33-P1  Cfa-Mir-33-P1  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P1  Cmi-Mir-33-P1  Cpi-Mir-33-P1  Cpo-Mir-33-P1  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P1  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P1  Gga-Mir-33-P1  Gja-Mir-33-P1  Gmo-Mir-33-P1a  Hsa-Mir-33-P1  Isc-Mir-33  Lch-Mir-33-P1  Lgi-Mir-33  Loc-Mir-33-P1  Mal-Mir-33-P1a  Mml-Mir-33-P1  Mun-Mir-33-P1  Npo-Mir-33  Oan-Mir-33-P1  Obi-Mir-33  Ocu-Mir-33-P1  Ovu-Mir-33  Pbv-Mir-33-P1  Pfl-Mir-33  Pma-Mir-33-o1  Pmi-Mir-33  Sko-Mir-33  Spt-Mir-33-P1  Spu-Mir-33  Sto-Mir-33-P1  Tca-Mir-33  Tgu-Mir-33-P1  Tni-Mir-33-P1a  Xbo-Mir-33  Xtr-Mir-33-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 LKPD01061375.1: 1389-1445 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCGCACAUGUGUCCUGGGCGGAGCUGUAGUGCAUUGUAGUUGCAUUGCAUGUGUGUGUAGUGUGCAAUGUUCCUGCAGUGCAACACAGAGCUGCACCACUGAUCCUCCAGCCCGA
Get precursor sequence
Structure
        10          20        30        40        50        
GCGCGCACAUGUGUCCU-  -|   AG    AG          UU        UGUGUG 
                  GG GCGG  CUGU  UGCAUUGUAG  GCAUUGCA      \
                  CC CGUC  GACA  ACGUGACGUC  UGUAACGU      U
AGCCCGACCUCCUAGUCA  A^   GA    CA          CU        GUGAUG 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archive.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-33-P1a_5p*
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
Mature sequence

Dre-Mir-33-P1a_3p
mirBase accessionNone
Sequence 
36- CAAUGUUCCUGCAGUGCAACA -57
Get sequence