MirGeneDB ID | Gga-Mir-33-P3 |
Family name |
MIR-33 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-33-1
|
Paralogues |
Gga-Mir-33-P1
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P3
Aga-Mir-33
Ami-Mir-33-P3
Ava-Mir-33
Bge-Mir-33
Bta-Mir-33-P3
Cfa-Mir-33-P3
Cin-Mir-33
Cja-Mir-33-P3
Cli-Mir-33-P3
Cmi-Mir-33-P3
Cpi-Mir-33-P3
Cpo-Mir-33-P3
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dgr-Mir-33
Dlo-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P3
Dpu-Mir-33
Dsi-Mir-33
Dya-Mir-33
Eba-Mir-33
Ebu-Mir-33
Eca-Mir-33-P3
Efe-Mir-33
Egr-Mir-33
Esc-Mir-33
Ete-Mir-33-P3
Gja-Mir-33-P3
Gpa-Mir-33
Gsp-Mir-33
Hru-Mir-33
Hsa-Mir-33-P3
Isc-Mir-33
Laf-Mir-33-P3
Lch-Mir-33-P3
Lgi-Mir-33
Llo-Mir-33
Loc-Mir-33-P3
Mal-Mir-33-P3
Mdo-Mir-33-P3
Mgi-Mir-33
Mml-Mir-33-P3
Mmr-Mir-33-P3
Mmu-Mir-33-P3
Mom-Mir-33
Mun-Mir-33-P3
Neu-Mir-33-P3
Npo-Mir-33
Oan-Mir-33-P3
Obi-Mir-33
Ocu-Mir-33-P3
Ofu-Mir-33
Ovu-Mir-33
Pab-Mir-33-P3
Pau-Mir-33
Pbv-Mir-33-P3
Pca-Mir-33
Pcr-Mir-33
Pdu-Mir-33
Pfl-Mir-33
Pma-Mir-33-o3
Pmi-Mir-33
Rno-Mir-33-P3
Sha-Mir-33-P3
Sko-Mir-33
Snu-Mir-33
Spt-Mir-33-P3
Spu-Mir-33
Sto-Mir-33-P3
Tca-Mir-33
Tgu-Mir-33-P3
Tni-Mir-33-P3
War-Mir-33
Xbo-Mir-33
Xla-Mir-33-P3a
Xla-Mir-33-P3b
Xtr-Mir-33-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gallus_gallus.GRCg6a) |
1: 49496339-49496399 [-]
UCSC
Ensembl
|
Seed |
UGCAUUG |
Precursor (pre-Mir +30nt flank) |
UGUCCCUGUCGCUCCUGGGUGGCAGCUGUAGUGCAUUGUAGUUGCAUUGCAUGUGCUGGCAGUAACUGUGCAAUGUUCCUGCAGUGCAGUACAGAGGCGCUUUCUAUUCGACAGAGCAGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGUCCCUGUCGCUCCUG---| G AG G UU UGUGCUGG
GGUG C CUGUA UGCAUUGUAG GCAUUGCA \
UCGC G GACAU ACGUGACGUC UGUAACGU C
UGGACGAGACAGCUUAUCUU^ - GA G CU GUCAAUGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3p arm is also monoadenylated at the 3' end. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Gga-Mir-33-P3_5p |
mirBase accession | MIMAT0001100 |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-33-5p
miRDB: MIMAT0001100
|
Co-mature sequence |
Gga-Mir-33-P3_3p |
mirBase accession | MIMAT0026490 |
Sequence |
40- CAAUGUUCCUGCAGUGCAGUA -61
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-33-3p
miRDB: MIMAT0026490
|