MirGeneDB ID | Loc-Mir-33-P3 |
Family name |
MIR-33 (all species) |
Seed |
UGCAUUG |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-33-P1
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P3
Ami-Mir-33-P3
Bge-Mir-33
Bta-Mir-33-P3
Cfa-Mir-33-P3
Cgi-Mir-33
Cin-Mir-33
Cli-Mir-33-P3
Cmi-Mir-33-P3
Cpi-Mir-33-P3
Cpo-Mir-33-P3
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P3
Dpu-Mir-33
Dsi-Mir-33
Dya-Mir-33
Ebu-Mir-33
Efe-Mir-33
Esc-Mir-33
Ete-Mir-33-P3
Gga-Mir-33-P3
Gja-Mir-33-P3
Hsa-Mir-33-P3
Isc-Mir-33
Lch-Mir-33-P3
Lgi-Mir-33
Mal-Mir-33-P3
Mdo-Mir-33-P3
Mml-Mir-33-P3
Mmu-Mir-33-P3
Mun-Mir-33-P3
Npo-Mir-33
Oan-Mir-33-P3
Obi-Mir-33
Ocu-Mir-33-P3
Ovu-Mir-33
Pbv-Mir-33-P3
Pfl-Mir-33
Pma-Mir-33-o3
Pmi-Mir-33
Rno-Mir-33-P3
Sha-Mir-33-P3
Sko-Mir-33
Spt-Mir-33-P3
Spu-Mir-33
Sto-Mir-33-P3
Tca-Mir-33
Tgu-Mir-33-P3
Tni-Mir-33-P3
Xbo-Mir-33
Xla-Mir-33-P3a
Xla-Mir-33-P3b
Xtr-Mir-33-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (LepOcu1) |
LG12: 35659756-35659815 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGCAGCCUCCAGGAGGGGGGCGGCUGUGGUGCAUUGUAGUUGCAUUGCAUGAUCCUGCAGCACAGUGCAAUGUGUCUCCAGUGCAGUACAGAGGCCCUCCGCAUCUCCACGUGCUCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGCAGCCUCCAGGAG- -| GG G U U UGAUCCU
GG GGGC CUGUG UGCAUUG AG UGCAUUGCA G
CC CCCG GACAU ACGUGAC UC GUGUAACGU C
ACCUCGUGCACCUCUACG U^ GA G C U GACACGA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Mature sequence |
Loc-Mir-33-P3_5p |
mirBase accession | None |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Star sequence |
Loc-Mir-33-P3_3p* |
mirBase accession | None |
Sequence |
39- CAAUGUGUCUCCAGUGCAGUA -60
Get sequence
|