Mir-33-o3

MirGeneDB ID

Pma-Mir-33-o3

Family name

MIR-33 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-33-o1 Pma-Mir-33-o2

Orthologues

Aae-Mir-33 Aca-Mir-33-P3 Aga-Mir-33 Ami-Mir-33-P3 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P3 Cfa-Mir-33-P3 Cin-Mir-33 Cja-Mir-33-P3 Cli-Mir-33-P3 Cmi-Mir-33-P3 Cpi-Mir-33-P3 Cpo-Mir-33-P3 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P3 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P3 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P3 Gga-Mir-33-P3 Gja-Mir-33-P3 Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P3 Isc-Mir-33 Laf-Mir-33-P3 Lch-Mir-33-P3 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P3 Mal-Mir-33-P3 Mdo-Mir-33-P3 Mgi-Mir-33 Mml-Mir-33-P3 Mmr-Mir-33-P3 Mmu-Mir-33-P3 Mom-Mir-33 Mun-Mir-33-P3 Neu-Mir-33-P3 Npo-Mir-33 Oan-Mir-33-P3 Obi-Mir-33 Ocu-Mir-33-P3 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P3 Pau-Mir-33 Pbv-Mir-33-P3 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pmi-Mir-33 Rno-Mir-33-P3 Sha-Mir-33-P3 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P3 Spu-Mir-33 Sto-Mir-33-P3 Tca-Mir-33 Tgu-Mir-33-P3 Tni-Mir-33-P3 War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P3a Xla-Mir-33-P3b Xtr-Mir-33-P3

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046111.1: 1209366-1209429 [-] UCSC Ensembl

Seed

UGCAUUG

Precursor
(pre-Mir +30nt flank)

ACGCCGACGUGCCCACCGAGCACCGCCGUGGUGCAUUGUAGUUGCAUUGCAUGCGCCGCCAGCAUCAGAGGUGCAAUGCACUUGCAGUGCAGUACGGAGGCGUUCACGGAUGGGGGUGGCUCAC

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Structure

        10          20        30        40        50        60 
ACGCCGACGUGCCCACC--|   A  G     G          U          GCGCCGCC 
                   GAGC CC CCGUG UGCAUUGUAG UGCAUUGCAU        A
                   CUUG GG GGCAU ACGUGACGUU ACGUAACGUG        G
CACUCGGUGGGGGUAGGCA^   C  A     G          C          GAGACUAC 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-33-o3_5p

mirBase accession

None

Sequence

0- GUGCAUUGUAGUUGCAUUGCAU -22

Get sequence

Star sequence

Pma-Mir-33-o3_3p* (predicted)

mirBase accession

None

Sequence

42- GCAAUGCACUUGCAGUGCAGUA -64

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