MirGeneDB 2.1

MirGeneDB ID

Mun-Mir-10-P1b-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species Microcaecilia (Microcaecilia unicolor)
MiRBase ID
Paralogues Mun-Mir-10-P1b-v1  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1c-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Mun-Mir-10-P2b  Mun-Mir-10-P2c  Mun-Mir-10-P2d  Mun-Mir-10-P3b  Mun-Mir-10-P3c  Mun-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1b-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1b-v2  Cgi-Mir-10-P1  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1b-v2  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v2  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1b-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1b-v2  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b1-v2  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1b2-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b1-v2  Mal-Mir-10-P1b2  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v2  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1b-v2  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v2  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1b-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1b-v2  Sko-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1b-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1b-v2  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(Mun_miRNA_loci)
10-P1b-v2_LR594638.1:221812833-221812974: 42-101 [-]
Precursor
(pre-Mir +30nt flank)
GAAAGCAAUGUUAUUACGUUGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGGUGUUUAUAUAAUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCGAUAUUCU
Get precursor sequence
Structure
        10          20        30        40        50          
GAAAGCAAUGUUAUUAC--|   U        A    G     C          UGGUGUU 
                   GUUG CUAUAUGU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       U
UCUUAUAGCUUCAAAAACG^   U        A    -     A          UAAUAUA 
.       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
To
Mature sequence

Mun-Mir-10-P1b-v2_5p

mirBase accessionNone
Sequence
0- ACCCUGUAGAACCGAAUUUGUGU -23
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Star sequence

Mun-Mir-10-P1b-v2_3p* (predicted)

mirBase accessionNone
Sequence
38- ACAGAUUCGAUUCUAGGGGAAU -60
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