MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-96-P2v

Family name MIR-96 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-96-P1r-v1  Lpo-Mir-96-P1s  Lpo-Mir-96-P1t  Lpo-Mir-96-P1u  Lpo-Mir-96-P2r  Lpo-Mir-96-P2s-v1  Lpo-Mir-96-P2t-v1  Lpo-Mir-96-P2u  Lpo-Mir-96-P2v-v1  Lpo-Mir-96-P3r  Lpo-Mir-96-P3s  Lpo-Mir-96-P3t  Lpo-Mir-96-P3u  Lpo-Mir-96-P3v 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Eca-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tur-Mir-96-P2  War-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665621.1: 1338514-1338570 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2v-v2)		 Mir-96-P2v-v1 NW_013665621.1: 1338513-1338571 [-] Ensembl
Mir-96-P2v-v2 NW_013665621.1: 1338514-1338570 [-] Ensembl
Mir-96-P3v NW_013665621.1: 1346537-1346596 [-] Ensembl
Variant

Lpo-Mir-96-P2v-v2
Seed UGGCACU
Precursor
(pre-Mir +30nt flank)		 
AAAUCAAGAAAGCCAGCAAGUCCGUUGUCCUUGGCACUGAAGAAUUCACAGAUAUGUUUAAAGUUCGUGGAUUCUCGGGUGCCAGAGAUAAAGGGUGUAACAACGCUCGGUUUCCAG
Get precursor sequence
Structure
        10        20          30        40        50        
AAAUCAAGAAAGCCAGCAAG--|  G     C        GA         A  UAUGU 
                      UCC UUGUC UUGGCACU  AGAAUUCAC GA     U
                      GGG AAUAG GACCGUGG  UCUUAGGUG CU     U
GACCUUUGGCUCGCAACAAUGU^  A     A        GC         -  UGAAA 
     110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-96-P2v-v2_5p
mirBase accessionNone
Sequence 
0- UUGGCACUGAAGAAUUCACAGA -22
Get sequence
Star sequence

Lpo-Mir-96-P2v-v2_3p* (predicted)
mirBase accessionNone
Sequence 
35- CGUGGAUUCUCGGGUGCCAGAG -57
Get sequence
Variant

Lpo-Mir-96-P2v-v1
Seed UUGGCAC
Precursor
(pre-Mir +30nt flank)		 
AAAAUCAAGAAAGCCAGCAAGUCCGUUGUCCUUGGCACUGAAGAAUUCACAGAUAUGUUUAAAGUUCGUGGAUUCUCGGGUGCCAGAGAUAAAGGGUGUAACAACGCUCGGUUUCCAGG
Get precursor sequence
Structure
        10        20          30        40        50         
AAAAUCAAGAAAGCCAGCAAG--|  G     C        GA         AGAUAUGU 
                       UCC UUGUC UUGGCACU  AGAAUUCAC        \
                       GGG AAUAG GACCGUGG  UCUUAGGUG        U
GGACCUUUGGCUCGCAACAAUGU^  A     A        GC         CUUGAAAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-96-P2v-v1_5p
mirBase accessionNone
Sequence 
0- CUUGGCACUGAAGAAUUCACAG -22
Get sequence
Star sequence

Lpo-Mir-96-P2v-v1_3p* (predicted)
mirBase accessionNone
Sequence 
37- GUGGAUUCUCGGGUGCCAGAGA -59
Get sequence