Mir-430-P20

MirGeneDB ID

Hsa-Mir-430-P20

Family name

MIR-430 (all species)

Seed

AAAGCGC

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-518b

Paralogues

Hsa-Mir-430-P1 Hsa-Mir-430-P2 Hsa-Mir-430-P3 Hsa-Mir-430-P4 Hsa-Mir-430-P5 Hsa-Mir-430-P6 Hsa-Mir-430-P7 Hsa-Mir-430-P8a Hsa-Mir-430-P8b Hsa-Mir-430-P9a Hsa-Mir-430-P9b Hsa-Mir-430-P11a Hsa-Mir-430-P11b Hsa-Mir-430-P13 Hsa-Mir-430-P14 Hsa-Mir-430-P15a Hsa-Mir-430-P15b Hsa-Mir-430-P15c Hsa-Mir-430-P18 Hsa-Mir-430-P19 Hsa-Mir-430-P21 Hsa-Mir-430-P22 Hsa-Mir-430-P23 Hsa-Mir-430-P24 Hsa-Mir-430-P25 Hsa-Mir-430-P26 Hsa-Mir-430-P27 Hsa-Mir-430-P28 Hsa-Mir-430-P29 Hsa-Mir-430-P30 Hsa-Mir-430-P31 Hsa-Mir-430-P32 Hsa-Mir-430-P33 Hsa-Mir-430-P34 Hsa-Mir-430-P35 Hsa-Mir-430-P36 Hsa-Mir-430-P37a Hsa-Mir-430-P37b Hsa-Mir-430-P39a Hsa-Mir-430-P39b Hsa-Mir-430-P41 Hsa-Mir-430-P42 Hsa-Mir-430-P43 Hsa-Mir-430-P44 Hsa-Mir-430-P45 Hsa-Mir-430-P46 Hsa-Mir-430-P47 Hsa-Mir-430-P48 Hsa-Mir-430-P49 Hsa-Mir-430-P50

Orthologues

Mml-Mir-430-P20 Sha-Mir-430-o20

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr19: 53702750-53702808 [+] UCSC Ensembl

Clustered MiRNAs
(< 10kb from Mir-430-P20)

Mir-430-P47 chr19: 53694406-53694464 [+] UCSC Ensembl
Mir-430-P27 chr19: 53695225-53695284 [+] UCSC Ensembl
Mir-430-P44 chr19: 53697547-53697605 [+] UCSC Ensembl
Mir-430-P42 chr19: 53698400-53698458 [+] UCSC Ensembl
Mir-430-P24 chr19: 53700030-53700088 [+] UCSC Ensembl
Mir-430-P32 chr19: 53701228-53701288 [+] UCSC Ensembl
Mir-430-P20 chr19: 53702750-53702808 [+] UCSC Ensembl
Mir-430-P45 chr19: 53706266-53706324 [+] UCSC Ensembl
Mir-430-P33 chr19: 53707468-53707527 [+] UCSC Ensembl
Mir-430-P21 chr19: 53708759-53708817 [+] UCSC Ensembl
Mir-430-P43 chr19: 53711017-53711075 [+] UCSC Ensembl
Mir-430-P15a chr19: 53712282-53712342 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GUUGGAGCAAGAAUAUGUCAUGCUGUGGCCCUCCAGAGGGAAGCGCUUUCUGUUGUCUGAAAGAAAACAAAGCGCUCCCCUUUAGAGGUUUACGGUUUGAGUAAAGCAGCGUUGAAGUU

Get precursor sequence

Structure

        10          20        30        40        50          
GUUGGAGCAAGAAUAUG--|  U      GC    C      A       UC   UGUCUG 
                   UCA GCUGUG  CCUC AGAGGG AGCGCUU  UGU      \
                   AGU UGGCAU  GGAG UUUCCC UCGCGAA  ACA      A
UUGAAGUUGCGACGAAAUG^  U      UU    A      C       --   AAAGAA 
       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Bo	Bo	Bo	Br	Br	Ce	Co	Fo	He	Ki	Li	Li	Lu	Pa	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-430-P20_5p*

MirBase accession

None

Sequence

0- CUCCAGAGGGAAGCGCUUUCUGU -23

Get sequence

Mature sequence

Hsa-Mir-430-P20_3p

MirBase accession

MIMAT0002844

Sequence

37- CAAAGCGCUCCCCUUUAGAGGU -59

Get sequence

Validated targets

microrna.org: MIMAT0002844
TargetScanVert: hsa-miR-518b
TargetMiner: hsa-miR-518b
miRDB: MIMAT0002844