MirGeneDB 2.1
MirGeneDB ID

Dma-Mir-279-o2

Family name MIR-279 (all species)
Seed GACUAGA
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o1  Dma-Mir-279-o3  Dma-Mir-279-o4  Dma-Mir-279-o5  Dma-Mir-279-o6 
Orthologues Aae-Mir-279-P2a  Aae-Mir-279-P2b1  Aae-Mir-279-P2b2  Bpl-Mir-279  Cgi-Mir-279  Dan-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-o2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046175.1: 6285937-6286000 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGUGGGACAACUUAAGUGUGCGUCAGUCGGCGAGUUCGGUUUUAGUUAUAUUUUAUAUUCAGUCAGUAUGACUAGAACCCACACUCGUCCGGUUGCUGUAUUCAAAUUCGUCUUCAUCGACU
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Structure
        10          20        30          40        50        60
GAAGUGGGACAACUUAAGU--     U  GU   -     UC-|            UUUUAUA 
                     GUGCG CA  CGG CGAGU   GGUUUUAGUUAUA       U
                     UAUGU GU  GCC GCUCA   CCAAGAUCAGUAU       U
UCAGCUACUUCUGCUUAAACU     C  UG   U     CAC^            GACUGAC 
  120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-279-o2_5p*
mirBase accessionNone
Sequence 
0- GGCGAGUUCGGUUUUAGUUAUA -22
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Mature sequence

Dma-Mir-279-o2_3p
mirBase accessionNone
Sequence 
40- UGACUAGAACCCACACUCGUCCGG -64
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