| MirGeneDB ID | Dma-Mir-279-o6 |
|---|
| Family name |
MIR-279 (all species) |
|---|
| Seed |
GACUAGA |
|---|
| Species |
Large common water flea (Daphnia magna) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Dma-Mir-279-o1
Dma-Mir-279-o2
Dma-Mir-279-o3
Dma-Mir-279-o4
Dma-Mir-279-o5
|
|---|
| Orthologues |
Bpl-Mir-279
Cgi-Mir-279
Dpu-Mir-279-o6
Esc-Mir-279
Isc-Mir-279
Lgi-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
|
|---|
| Node of Origin (locus) |
Daphnia
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(DMA_ASM399081) |
NC_046182.1: 2914774-2914845 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUCUUCAAGUCUCGACACCACUUGUUGCCGGAUGAUUGUGUGUCUGGUCCAUGUUAACUUUAUUUGGCAUUCGACAUUCAUGACUAGAUCCACACUCAUCCAGUGACGUAGUUGGUAUUUCAUCCGUUUCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUCUUCAAGUCUCGACACC- -| UG C U UG C UUAACUUUAUUU
ACU UGU C GGAUGA UGUG UCUGGUC AUG \
UGA GCA G CCUACU ACAC AGAUCAG UAC G
GACUUUGCCUACUUUAUGGU U^ GU A C CU - UUACAGCUUACG
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| 01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Dma-Mir-279-o6_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAUGAUUGUGUGUCUGGUCCAUGU -24
Get sequence
|
|---|
| Mature sequence |
Dma-Mir-279-o6_3p |
| mirBase accession | None |
|---|
| Sequence |
50- UGACUAGAUCCACACUCAUCCA -72
Get sequence
|
|---|
