MirGeneDB 2.1

MirGeneDB ID

Dma-Mir-279-o4

Family name MIR-279 (all species)
Seed GACUAGA
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o1  Dma-Mir-279-o2  Dma-Mir-279-o3  Dma-Mir-279-o5  Dma-Mir-279-o6 
Orthologues Bpl-Mir-279  Cgi-Mir-279  Dpu-Mir-279-o4  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Sme-Mir-279-P4 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)
NC_046174.1: 9091763-9091828 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCCAACAGCUAGGGUUGGGCGCUCUCUAGGUGGGUCUGUUUCUAGUGCAUGUGUUUUCUGCCUGUUUGUUCAUGACUAGAUCCAUACUCAUCUAAAGGGACCCAAUCGUUCUACAUUAGUAAAA
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Structure
        10           20        30        40        50        60   
AUUCCAACAGCUAGGGU---|   CG    C         C  UU      G    UGUUUUCUG 
                    UGGG  CUCU UAGGUGGGU UG  UCUAGU CAUG         \
                    ACCC  GGGA AUCUACUCA AC  AGAUCA GUAC         C
AAAAUGAUUACAUCUUGCUA^   A-    A         U  CU      -    UUGUUUGUC 
    120       110        100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. Note that there is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-279-o4_5p*

mirBase accessionNone
Sequence
0- GGUGGGUCUGUUUCUAGUGCAUG -23
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Mature sequence

Dma-Mir-279-o4_3p

mirBase accessionNone
Sequence
44- UGACUAGAUCCAUACUCAUCUA -66
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