MirGeneDB

MirGeneDB ID

Aae-Mir-279-P2b1

Family name MIR-279 (all species)
Seed GACUAGA
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-286b-1
Paralogues Aae-Mir-279-o26  Aae-Mir-279-P1  Aae-Mir-279-P2a  Aae-Mir-279-P2b2  Aae-Mir-279-P3 
Orthologues Cgi-Mir-279  Dan-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-o2  Isc-Mir-279  Lgi-Mir-279 
Node of Origin (locus) A. aegypti
Node of Origin (family) Protostomia
Genome context
(Aaeg_L3)
supercont1.602: 93485-93563 [+] Ensembl
Clustered MiRNAs
(< 10kb from Mir-279-P2b1)
Mir-279-P2b1 supercont1.602: 93485-93563 [+] Ensembl
Mir-2-P10a supercont1.602: 93656-93722 [+] Ensembl
Mir-3-P2a1 supercont1.602: 94041-94109 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGCCACACAAAGAAGUCCAAGUCCUGGGGCGAUUGUCGGCUUAGUCGCUGUAUCAUUUCAACUGCUGUGCAGUUCUUCGCUAGUGACUAGACCGAACACUCGUAUCCCAGGCCUUUACGGGACCAAGUUCGUCGUU
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Structure
        10         20        30           40        50        60        
CAAAGCCACACAAAGAA-  CC   U      --    U  -|   CU        GUAUCAUUUCAACUG 
                  GU  AAG CCUGGG  GCGA UG UCGG  UAGUCGCU               C
                  CA  UUC GGACCC  UGCU AC AGCC  AUCAGUGA               U
UUGCUGCUUGAACCAGGG  U-   C      UA    C  A^   AG        UCGCUUCUUGACGUG 
       130       120        110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Aae-Mir-279-P2b1_5p*

MirBase accessionNone
Sequence
0- GGCGAUUGUCGGCUUAGUCGCU -22
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Mature sequence

Aae-Mir-279-P2b1_3p

MirBase accessionMIMAT0014313
Sequence
56- UGACUAGACCGAACACUCGUAUC -79
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