MirGeneDB 2.1

MirGeneDB ID

Dma-Mir-279-o3

Family name MIR-279 (all species)
Seed GACUAGA
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o1  Dma-Mir-279-o2  Dma-Mir-279-o4  Dma-Mir-279-o5  Dma-Mir-279-o6 
Orthologues Aae-Mir-279-P3  Bpl-Mir-279  Cgi-Mir-279  Dan-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-o3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Esc-Mir-279  Isc-Mir-279  Lgi-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)
NC_046174.1: 9091292-9091368 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGUUGCUUUUAUUUAACCCAGCUUCGUUCGGUGGAUAUGGUUCUCGUGACAUGGCUUUUAUCGGCUUUGAUUUCCGAGUGCACAUGACUAGAUCCAUACUCACCAGACGAGAUUGGGGCAAUCAUCGUUUAAGCCG
Get precursor sequence
Structure
        10          20        30        40        50        60         
UAGUUGCUUUUAUUUAA--|    C     UC    GA     U   C  GA    GCUUUUAUCGGCUU 
                   CCCAG UUCGU  GGUG  UAUGG UCU GU  CAUG              \
                   GGGUU GAGCA  CCAC  AUACC AGA CA  GUAC              U
GCCGAAUUUGCUACUAACG^    A     GA    UC     U   U  --    ACGUGAGCCUUUAG 
     130       120       110       100        90          80        70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. Note that there is a second Drosha cut +2 on the 5p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-279-o3_5p*

mirBase accessionNone
Sequence
0- GGUGGAUAUGGUUCUCGUGACAUG -24
Get sequence
Mature sequence

Dma-Mir-279-o3_3p

mirBase accessionNone
Sequence
55- UGACUAGAUCCAUACUCACCAG -77
Get sequence