MirGeneDB ID | Cpo-Mir-10-P1b |
Family name |
MIR-10 (all species) |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-10b
|
Paralogues |
Cpo-Mir-10-P1b-v1
Cpo-Mir-10-P1c-v1
Cpo-Mir-10-P2b
Cpo-Mir-10-P2c
Cpo-Mir-10-P2d
Cpo-Mir-10-P3b
Cpo-Mir-10-P3c
Cpo-Mir-10-P3d
|
Orthologues |
Aae-Mir-10-P1-v1
Aca-Mir-10-P1b-v1
Adi-Mir-10
Aga-Mir-10-P1-v1
Agr-Mir-10-P1
Ami-Mir-10-P1b-v1
Asp-Mir-10
Asu-Mir-10-P1
Bfl-Mir-10-P1-v1
Bge-Mir-10-P1-v1
Bla-Mir-10-P1-v1
Bta-Mir-10-P1b-v1
Cbr-Mir-10-P1
Cel-Mir-10-P1
Cfa-Mir-10-P1b-v1
Cja-Mir-10-P1b-v1
Cli-Mir-10-P1b-v1
Cmi-Mir-10-P1b-v1
Cpi-Mir-10-P1b-v1
Cte-Mir-10-P1
Dan-Mir-10-P1
Dgr-Mir-10-P1
Dlo-Mir-10-P1-v1
Dma-Mir-10-P1-v1
Dme-Mir-10-P1
Dmo-Mir-10-P1
Dno-Mir-10-P1b-v1
Dpu-Mir-10-P1-v1
Dre-Mir-10-P1b1-v1
Dre-Mir-10-P1b2-v1
Dsi-Mir-10-P1
Dya-Mir-10-P1
Eba-Mir-10-P1
Eca-Mir-10-P1b-v1
Efe-Mir-10-P1
Egr-Mir-10-P1
Ete-Mir-10-P1b-v1
Gga-Mir-10-P1b-v1
Gja-Mir-10-P1b-v1
Gmo-Mir-10-P1b1-v1
Gmo-Mir-10-P1b2-v1
Gpa-Mir-10-P1
Gsp-Mir-10-P1
Hme-Mir-10-P1-v1
Hmi-Mir-10-P1b
Hru-Mir-10-P1
Hsa-Mir-10-P1b-v1
Isc-Mir-10-P1-v1
Laf-Mir-10-P1b
Lch-Mir-10-P1b
Lgi-Mir-10-P1
Lhy-Mir-10-P1
Llo-Mir-10-P1
Loc-Mir-10-P1b-v1
Mal-Mir-10-P1b1-v1
Mal-Mir-10-P1b2
Mdo-Mir-10-P1b-v1
Mgi-Mir-10-P1
Mml-Mir-10-P1b-v1
Mmr-Mir-10-P1b-v1
Mmu-Mir-10-P1b-v1
Mom-Mir-10-P1
Mun-Mir-10-P1b-v1
Neu-Mir-10-P1b-v1
Npo-Mir-10-P1
Nve-Mir-10
Oan-Mir-10-P1b-v1
Ocu-Mir-10-P1b-v1
Ofu-Mir-10-P1
Pab-Mir-10-P1b-v1
Pau-Mir-10-P1
Pbv-Mir-10-P1b-v1
Pca-Mir-10-P1
Pdu-Mir-10-P1
Pfl-Mir-10-P1
Pmi-Mir-10-P1
Pve-Mir-10-P1
Rno-Mir-10-P1b-v1
Rph-Mir-10-P1
Sha-Mir-10-P1b-v1
Sko-Mir-10-P1
Sma-Mir-10-P1
Snu-Mir-10-P1
Spt-Mir-10-P1b
Spu-Mir-10-P1
Sto-Mir-10-P1b-v1
Tca-Mir-10-P1-v1
Tgu-Mir-10-P1b-v1
Tni-Mir-10-P1b1-v1
Tni-Mir-10-P1b2
War-Mir-10-P1
Xbo-Mir-10-P1
Xla-Mir-10-P1b3-v1
Xla-Mir-10-P1b4-v1
Xtr-Mir-10-P1b-v1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Eumetazoa
|
Genome context (cavPor3) |
scaffold_3: 14161470-14161529 [-]
UCSC
|
Clustered miRNAs (< 50kb from Mir-10-P1b-v2) |
Mir-10-P1b-v1
scaffold_3: 14161469-14161530 [-]
UCSC
Mir-10-P1b-v2
scaffold_3: 14161470-14161529 [-]
UCSC
|
Variant | Cpo-Mir-10-P1b-v2 |
Seed |
CCCUGUA |
Precursor (pre-Mir +30nt flank) |
GACCCGAAGGUUGUAACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAUCCACAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACAUUUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GACCCGAAGGUUGUAAC--| U A G C UGGUAUC
GUUG CUAUAUAU CCCU UAGAA CGAAUUUGUG \
UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC C
UCUUUACACUUCAAAAACG^ U A - A UGAUACA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-10-P1b-v2_5p |
mirBase accession | MIMAT0046847 |
Sequence |
0- ACCCUGUAGAACCGAAUUUGUG -22
Get sequence
|
Star sequence |
Cpo-Mir-10-P1b-v2_3p* |
mirBase accession | MIMAT0046848 |
Sequence |
39- CAGAUUCGAUUCUAGGGGAAU -60
Get sequence
|
Variant | Cpo-Mir-10-P1b-v1 |
Seed |
ACCCUGU |
Precursor (pre-Mir +30nt flank) |
GGACCCGAAGGUUGUAACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAUCCACAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCACAUUUCUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGACCCGAAGGUUGUAA--| U A G C GUGGUAUC
CGUUG CUAUAUAU CCCU UAGAA CGAAUUUGU \
GUAGC GGUAUAUA GGGG AUCUU GCUUAGACA C
CUCUUUACACUUCAAAAAC^ U A - A CUGAUACA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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|
Mature sequence |
Cpo-Mir-10-P1b-v1_5p |
mirBase accession | MIMAT0046847 |
Sequence |
0- UACCCUGUAGAACCGAAUUUGU -22
Get sequence
|
Star sequence |
Cpo-Mir-10-P1b-v1_3p* |
mirBase accession | MIMAT0046848 |
Sequence |
41- AGAUUCGAUUCUAGGGGAAUA -62
Get sequence
|