MirGeneDB

MirGeneDB ID

Cli-Mir-199-P1-v3

Family name MIR-199 (all species)
Seed AGUAGUC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-199-2
Paralogues Cli-Mir-199-P1-v1  Cli-Mir-199-P1-v2  Cli-Mir-199-P3-v1  Cli-Mir-199-P3-v2  Cli-Mir-199-P3-v3 
Orthologues Aca-Mir-199-P1-v1  Aca-Mir-199-P1-v2  Aca-Mir-199-P1-v3  Ami-Mir-199-P1-v1  Ami-Mir-199-P1-v2  Ami-Mir-199-P1-v3  Bta-Mir-199-P1-v1  Bta-Mir-199-P1-v2  Bta-Mir-199-P1-v3  Cfa-Mir-199-P1-v1  Cfa-Mir-199-P1-v2  Cfa-Mir-199-P1-v3  Cpi-Mir-199-P1-v1  Cpi-Mir-199-P1-v2  Cpi-Mir-199-P1-v3  Cpo-Mir-199-P1-v1  Cpo-Mir-199-P1-v2  Cpo-Mir-199-P1-v3  Dno-Mir-199-P1-v1  Dno-Mir-199-P1-v2  Dno-Mir-199-P1-v3  Dre-Mir-199-P1-v1  Dre-Mir-199-P1-v2  Dre-Mir-199-P1-v3  Ete-Mir-199-P1-v1  Ete-Mir-199-P1-v2  Ete-Mir-199-P1-v3  Gga-Mir-199-P1-v1  Gga-Mir-199-P1-v2  Gga-Mir-199-P1-v3  Hsa-Mir-199-P1-v1  Hsa-Mir-199-P1-v2  Hsa-Mir-199-P1-v3  Mdo-Mir-199-P1-v1  Mdo-Mir-199-P1-v2  Mdo-Mir-199-P1-v3  Mml-Mir-199-P1-v1  Mml-Mir-199-P1-v2  Mml-Mir-199-P1-v3  Mmu-Mir-199-P1-v1  Mmu-Mir-199-P1-v2  Mmu-Mir-199-P1-v3  Oan-Mir-199-P1-v1  Oan-Mir-199-P1-v2  Oan-Mir-199-P1-v3  Ocu-Mir-199-P1-v1  Ocu-Mir-199-P1-v2  Ocu-Mir-199-P1-v3  Rno-Mir-199-P1-v1  Rno-Mir-199-P1-v2  Rno-Mir-199-P1-v3  Sha-Mir-199-P1-v1  Sha-Mir-199-P1-v2  Sha-Mir-199-P1-v3  Sto-Mir-199-P1-v1  Sto-Mir-199-P1-v2  Sto-Mir-199-P1-v3  Tgu-Mir-199-P1-v1  Tgu-Mir-199-P1-v2  Tgu-Mir-199-P1-v3 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold835: 50412-50472 [+]
Clustered MiRNAs
(< 10kb from Mir-199-P1-v3)
Mir-199-P1-v1 scaffold835: 50412-50472 [+]
Mir-199-P1-v2 scaffold835: 50412-50472 [+]
Mir-199-P1-v3 scaffold835: 50412-50472 [+]
Precursor
(pre-Mir +30nt flank)
GAGCAGACUGCAGAGGCUCCACUCCGUCUGCCCAGUGUUCAGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUACACCACACACUGCCA
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Structure
        10         20         30        40        50        60
GAGCAGACUGCAGAGGC-    CUCC-|    C       U        C   UCAGGACU 
                  UCCA     GUCUG CCAGUGU CAGACUAC UGU        A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA        C
ACCGUCACACACCACAUA    CGUGU^    U       C        -   UGUUAGAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cli-Mir-199-P1-v3_5p*

MirBase accessionMIMAT0038573
Sequence
0- CCCAGUGUUCAGACUACCUGUU -22
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Mature sequence

Cli-Mir-199-P1-v3_3p

MirBase accessionMIMAT0038574
Sequence
40- CAGUAGUCUGCACAUUGGUUA -61
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