MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-214

Family name MIR-214 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-214
Paralogues Cli-Mir-214-v1 
Orthologues Cja-Mir-214  Laf-Mir-214  Lch-Mir-214  Mun-Mir-214  Pab-Mir-214  Spt-Mir-214 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(colLiv2)		 scaffold7: 10456145-10456207 [+]
Clustered miRNAs
(< 50kb from Mir-214-v2)		 Mir-199-P1-v1 scaffold7: 10450277-10450337 [+]
Mir-199-P1-v2 scaffold7: 10450277-10450337 [+]
Mir-199-P1-v3 scaffold7: 10450277-10450337 [+]
Mir-214-v1 scaffold7: 10456145-10456207 [+]
Mir-214-v2 scaffold7: 10456145-10456207 [+]
Variant

Cli-Mir-214-v2
Seed ACAGCAG
Precursor
(pre-Mir +30nt flank)		 
GGGACUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCGCAUGACAACCCAGCCUGAGGGACAGCCG
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGGACUGGCUGGACGGA--|          U          ACA           GAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGCA       \
                   CAACAGUACGC GACGGACAGA   GGACGACAUGU       C
GCCGACAGGGAGUCCGACC^          U          CAC           CCACUCU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-214-v2_5p*
mirBase accessionMIMAT0038592
Sequence 
0- UGCCUGUCUACACUUGCUGUGCA -23
Get sequence
Mature sequence

Cli-Mir-214-v2_3p
mirBase accessionMIMAT0038593
Sequence 
40- UACAGCAGGCACAGACAGGCAGU -63
Get sequence
Variant

Cli-Mir-214-v1
Seed CAGCAGG
Precursor
(pre-Mir +30nt flank)		 
GGGACUGGCUGGACGGAGUUGUCAUGUGUCUGCCUGUCUACACUUGCUGUGCAGAACAUCCUCUCACCUGUACAGCAGGCACAGACAGGCAGUCGCAUGACAACCCAGCCUGAGGGACAGCCG
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGGACUGGCUGGACGGA--|          U          ACA          AGAACAUC 
                   GUUGUCAUGUG CUGCCUGUCU   CUUGCUGUGC        \
                   CAACAGUACGC GACGGACAGA   GGACGACAUG        C
GCCGACAGGGAGUCCGACC^          U          CAC          UCCACUCU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-214-v1_5p*
mirBase accessionMIMAT0038592
Sequence 
0- UGCCUGUCUACACUUGCUGUGC -22
Get sequence
Mature sequence

Cli-Mir-214-v1_3p
mirBase accessionMIMAT0038593
Sequence 
41- ACAGCAGGCACAGACAGGCAGU -63
Get sequence