MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-124-P2-v2

Family name MIR-124 (all species)
Seed UAAGGCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-124-1
Paralogues Cfa-Mir-124-P1-v1  Cfa-Mir-124-P1-v2  Cfa-Mir-124-P2-v1  Cfa-Mir-124-P3-v1  Cfa-Mir-124-P3-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P2-v1  Aca-Mir-124-P2-v2  Ami-Mir-124-P2-v1  Ami-Mir-124-P2-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bla-Mir-124  Bta-Mir-124-P2-v1  Bta-Mir-124-P2-v2  Cel-Mir-124  Cmi-Mir-124-P2-v1  Cmi-Mir-124-P2-v2  Cpi-Mir-124-P2-v1  Cpi-Mir-124-P2-v2  Cpo-Mir-124-P2-v1  Cpo-Mir-124-P2-v2  Cte-Mir-124  Dan-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P2-v1  Dno-Mir-124-P2-v2  Dpu-Mir-124  Dre-Mir-124-P2a-v1  Dre-Mir-124-P2a-v2  Dsi-Mir-124  Dya-Mir-124  Esc-Mir-124  Ete-Mir-124-P2-v1  Ete-Mir-124-P2-v2  Gga-Mir-124-P2-v1  Gga-Mir-124-P2-v2  Gja-Mir-124-P2-v1  Gja-Mir-124-P2-v2  Hme-Mir-124  Hsa-Mir-124-P2-v1  Hsa-Mir-124-P2-v2  Isc-Mir-124  Lan-Mir-124  Lch-Mir-124-P2  Loc-Mir-124-P2-v1  Loc-Mir-124-P2-v2  Mal-Mir-124-P2a-v1  Mal-Mir-124-P2a-v2  Mdo-Mir-124-P2-v1  Mdo-Mir-124-P2-v2  Mml-Mir-124-P2-v1  Mml-Mir-124-P2-v2  Mmu-Mir-124-P2-v1  Mmu-Mir-124-P2-v2  Mun-Mir-124-P2-v1  Mun-Mir-124-P2-v2  Npo-Mir-124  Obi-Mir-124  Ocu-Mir-124-P2-v1  Ocu-Mir-124-P2-v2  Ovu-Mir-124  Pbv-Mir-124-P2-v1  Pbv-Mir-124-P2-v2  Pfl-Mir-124  Pma-Mir-124-o2  Pmi-Mir-124  Rno-Mir-124-P2-v1  Rno-Mir-124-P2-v2  Sha-Mir-124-P2-v1  Sha-Mir-124-P2-v2  Sko-Mir-124  Spt-Mir-124-P2  Spu-Mir-124  Sto-Mir-124-P2-v1  Sto-Mir-124-P2-v2  Tca-Mir-124  Tgu-Mir-124-P2-v1  Tgu-Mir-124-P2-v2  Tni-Mir-124-P2a-v1  Tni-Mir-124-P2a-v2  Tni-Mir-124-P2b-v1  Tni-Mir-124-P2b-v2  Xbo-Mir-124  Xla-Mir-124-P2c-v1  Xla-Mir-124-P2c-v2  Xla-Mir-124-P2d-v1  Xla-Mir-124-P2d-v2  Xtr-Mir-124-P2-v1  Xtr-Mir-124-P2-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(canFam3_add)
chr25: 28188263-28188322 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P2-v2)
Mir-124-P2-v1 chr25: 28188263-28188323 [+] UCSC Ensembl
Mir-124-P2-v2 chr25: 28188263-28188322 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUCCUCAGGAGAAAGGCCUCUCUCUCCGUGUUCACAGCGGACCUUGAUUUAAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAAUGGGGCUGGCUGAGCACCGUCGGUCC
Get precursor sequence
Structure
        10         20        30        40        50          
UUCCUUCCUCAGGAGAAA-|     UC   CC        A   GA        UAAAUG 
                   GGCCUC  UCU  GUGUUCAC GCG  CCUUGAUU      \
                   UCGGGG  AGA  CGUAAGUG CGC  GGAAUUAA      U
CCUGGCUGCCACGAGUCGG^     UA   AC        G   AC        CAUACC 
.       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-124-P2-v2_5p*

mirBase accessionNone
Sequence
0- CGUGUUCACAGCGGACCUUGAUU -23
Get sequence
Mature sequence

Cfa-Mir-124-P2-v2_3p

mirBase accessionMIMAT0006657
Sequence
38- UUAAGGCACGCGGUGAAUGCCA -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-124
miRDB: MIMAT0006657