MirGeneDB

MirGeneDB ID

Ami-Mir-124-P3-v2

Family name MIR-124 (all species)
Seed UAAGGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-124-3
Paralogues Ami-Mir-124-P1-v1  Ami-Mir-124-P1-v2  Ami-Mir-124-P2-v1  Ami-Mir-124-P2-v2  Ami-Mir-124-P3-v1  Ami-Mir-124-P4-v1  Ami-Mir-124-P4-v2 
Orthologues Aae-Mir-124  Aca-Mir-124-P3-v1  Aca-Mir-124-P3-v2  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bta-Mir-124-P3-v1  Bta-Mir-124-P3-v2  Cel-Mir-124  Cfa-Mir-124-P3-v1  Cfa-Mir-124-P3-v2  Cli-Mir-124-P3-v1  Cli-Mir-124-P3-v2  Cpi-Mir-124-P3-v1  Cpi-Mir-124-P3-v2  Cpo-Mir-124-P3-v1  Cpo-Mir-124-P3-v2  Cte-Mir-124  Dan-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P3-v1  Dno-Mir-124-P3-v2  Dpu-Mir-124  Dre-Mir-124-P3a-v1  Dre-Mir-124-P3a-v2  Dre-Mir-124-P3b-v1  Dre-Mir-124-P3b-v2  Gga-Mir-124-P3-v1  Gga-Mir-124-P3-v2  Hme-Mir-124  Hsa-Mir-124-P3-v1  Hsa-Mir-124-P3-v2  Isc-Mir-124  Lan-Mir-124  Mdo-Mir-124-P3-v1  Mdo-Mir-124-P3-v2  Mml-Mir-124-P3-v1  Mml-Mir-124-P3-v2  Mmu-Mir-124-P3-v1  Mmu-Mir-124-P3-v2  Oan-Mir-124-P3-v1  Oan-Mir-124-P3-v2  Ocu-Mir-124-P3-v1  Ocu-Mir-124-P3-v2  Pfl-Mir-124  Pmi-Mir-124  Rno-Mir-124-P3-v1  Rno-Mir-124-P3-v2  Sha-Mir-124-P3-v1  Sha-Mir-124-P3-v2  Sko-Mir-124  Spu-Mir-124  Sto-Mir-124-P3-v1  Sto-Mir-124-P3-v2  Tca-Mir-124  Tgu-Mir-124-P3-v1  Tgu-Mir-124-P3-v2  Xtr-Mir-124-P3-v1  Xtr-Mir-124-P3-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(allMis1)
JH731409: 571188-571246 [+] UCSC
Clustered MiRNAs
(< 10kb from Mir-124-P3-v2)
Mir-124-P3-v1 JH731409: 571188-571247 [+] UCSC
Mir-124-P3-v2 JH731409: 571188-571246 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCCCCGUGGGGCCAGGCGAGCCCCUCUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGAGGAGCCUCACAGCUUCAUUUGCAUG
Get precursor sequence
Structure
        10         20         30        40        50         
CCCCCGUGGGGCCAGGCGA-  C      -| C        A   GA        UAAUG 
                    GC CCUCUC UG GUGUUCAC GCG  CCUUGAUU     U
                    CG GGAGAG AC CGUAAGUG CGC  GGAAUUAA     C
GUACGUUUACUUCGACACUC  A      A^ -        G   AC        CAUAC 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-124-P3-v2_5p*

MirBase accessionMIMAT0038125
Sequence
0- CGUGUUCACAGCGGACCUUGAUU -23
Get sequence
Mature sequence

Ami-Mir-124-P3-v2_3p

MirBase accessionMIMAT0038126
Sequence
37- UUAAGGCACGCGGUGAAUGCCA -59
Get sequence