MirGeneDB 3.0
126 microRNA genes with seed GGCAAGA
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Aae-Mir-31 aae-mir-31 MIR-31 GGCAAGA MIMAT0014276 None supercont1.636 483222 483279 - Bilateria Bilateria No 1 1
Aca-Mir-31 aca-mir-31 MIR-31 GGCAAGA MIMAT0021930 MIMAT0021931 2 61607441 61607499 + Bilateria Bilateria No 1
Aga-Mir-31 aga-mir-31 MIR-31 GGCAAGA MIMAT0041568 MIMAT0041569 NC_064600.1 14490931 14490988 + Bilateria Bilateria No 1
Agr-Mir-31 None MIR-31 GGCAAGA None None JABBOT010000004.1 4999855 4999915 + Bilateria Bilateria No 1
Ami-Mir-31 ami-mir-31 MIR-31 GGCAAGA MIMAT0038088 MIMAT0038089 NW_017714378.1 656460 656518 + Bilateria Bilateria No 1
Asu-Mir-31 asu-mir-72 MIR-31 GGCAAGA MIMAT0021468 MIMAT0021469 Scaffold618 63636 63697 + Bilateria Bilateria No
Ava-Mir-31 None MIR-31 GGCAAGA None None CP075496.1 5796042 5796106 + Bilateria Bilateria Unknown
Bfl-Mir-31 bfl-mir-31 MIR-31 GGCAAGA MIMAT0009473 MIMAT0019141 NC_049993.1 300554 300614 - Bilateria Bilateria No
Bge-Mir-31 None MIR-31 GGCAAGA None None KZ614513.1 1183518 1183577 + Bilateria Bilateria No 1
Bla-Mir-31 None MIR-31 GGCAAGA None None Sc0000399 174416 174477 + Bilateria Bilateria No 1
Bpl-Mir-31 None MIR-31 GGCAAGA None None QEOQ01000345.1 929582 929639 + Bilateria Bilateria No 1
Bta-Mir-31 bta-mir-31 MIR-31 GGCAAGA MIMAT0003548 None NC_037335.1 22502386 22502444 + Bilateria Bilateria No 1 1
Cel-Mir-31 cel-mir-72 MIR-31 GGCAAGA MIMAT0000044 MIMAT0020318 chrII 2452854 2452919 + Bilateria Bilateria No
Cfa-Mir-31 cfa-mir-31 MIR-31 GGCAAGA MIMAT0006599 None chr11 40904438 40904496 - Bilateria Bilateria No 1
Cin-Mir-31 cin-mir-31 MIR-31 GGCAAGA MIMAT0006092 None HT000111.1 89204 89265 - Bilateria Bilateria No 1 1
Cja-Mir-31 None MIR-31 GGCAAGA None None CM021915.1 125531512 125531571 - Bilateria Bilateria Unknown 1
Cli-Mir-31 cli-mir-31 MIR-31 GGCAAGA MIMAT0038460 MIMAT0038461 scaffold476 622320 622378 + Bilateria Bilateria No 1
Cmi-Mir-31 None MIR-31 GGCAAGA None None KI635929.1 1945683 1945740 + Bilateria Bilateria Yes 1 1
Cpi-Mir-31 cpi-mir-31 MIR-31 GGCAAGA MIMAT0037685 MIMAT0037686 JH584648 133182 133240 - Bilateria Bilateria No 1
Cpo-Mir-31 cpo-mir-31 MIR-31 GGCAAGA MIMAT0046914 MIMAT0046915 scaffold_2 600471 600529 - Bilateria Bilateria No 1
Cte-Mir-31 cte-mir-31 MIR-31 GGCAAGA MIMAT0009515 None CAPTEscaffold_43 86484 86544 - Bilateria Bilateria No 1
Dgr-Mir-31 None MIR-31 GGCAAGA None None CAJFCJ010000002.1 2759470 2759541 - Bilateria Bilateria Unknown 1
Dlo-Mir-31 None MIR-31 GGCAAGA None None NC_087229.1 19273 19333 + Bilateria Bilateria Unknown 1 1
Dma-Mir-31 None MIR-31 GGCAAGA None None NC_046175.1 12368730 12368791 - Bilateria Bilateria No
Dno-Mir-31 dno-mir-31 MIR-31 GGCAAGA MIMAT0047567 MIMAT0047568 JH566723 525341 525399 - Bilateria Bilateria No 1 1
Dpu-Mir-31 dpu-mir-31 MIR-31 GGCAAGA MIMAT0012659 None gnl_ti_814293389_AZSH327271 39 100 - Bilateria Bilateria No
Dre-Mir-31 dre-mir-31 MIR-31 GGCAAGA MIMAT0003347 None chr7 73263755 73263815 - Bilateria Bilateria No 1
Eba-Mir-31 None MIR-31 GGCAAGA None None WURV02195991.1 6057 6120 + Bilateria Bilateria Unknown 1
Ebu-Mir-31 None MIR-31 GGCAAGA None None FYBX02009555.1 311839 311894 + Bilateria Bilateria Unknown 1
Eca-Mir-31 eca-mir-31 MIR-31 GGCAAGA MIMAT0013115 None CM009170.1 40089699 40089757 - Bilateria Bilateria No 1 1
Efe-Mir-31 None MIR-31 GGCAAGA None None Efet.01.174306 5298 5359 + Bilateria Bilateria No 1 1
Egr-Mir-31 egr-mir-31 MIR-31 GGCAAGA MIMAT0041177 MIMAT0041178 APAU02000211.1 49503 49564 - Bilateria Bilateria No 1
Esc-Mir-31 None MIR-31 GGCAAGA None None CM044502.1 99371074 99371131 - Bilateria Bilateria No 1
Ete-Mir-31 None MIR-31 GGCAAGA None None JH980317 14279606 14279664 - Bilateria Bilateria No 1 1
Gga-Mir-31 gga-mir-31 MIR-31 GGCAAGA MIMAT0001189 MIMAT0026549 Z 78732018 78732076 - Bilateria Bilateria No 1
Gmo-Mir-31 gmo-mir-31 MIR-31 GGCAAGA MIMAT0044100 None GeneScaffold_1111 103251 103306 - Bilateria Bilateria No 1 1
Hme-Mir-31 None MIR-31 GGCAAGA None None FASA01202097.1 1291 1349 + Bilateria Bilateria Unknown 1
Hmi-Mir-31 None MIR-31 GGCAAGA None None SCFE01000180.1 1154386 1154439 + Bilateria Bilateria Unknown 1
Hru-Mir-31 None MIR-31 GGCAAGA None None JALGQA010000002.1 3146529 3146590 + Bilateria Bilateria Unknown 1
Hsa-Mir-31 hsa-mir-31 MIR-31 GGCAAGA MIMAT0000089 MIMAT0004504 chr9 21512120 21512178 - Bilateria Bilateria No 1 1
Isc-Mir-31 None MIR-31 GGCAAGA None None NW_024609838.1 88059419 88059480 + Bilateria Bilateria Unknown 1 1
Laf-Mir-31 None MIR-31 GGCAAGA None None GL010033.1 77705597 77705655 + Bilateria Bilateria Unknown 1 1
Lch-Mir-31 None MIR-31 GGCAAGA None None JH128150.1 522982 523040 - Bilateria Bilateria Unknown 1 1
Lgi-Mir-31 lgi-mir-31 MIR-31 GGCAAGA MIMAT0009566 None LOTGIsca_62 866087 866148 - Bilateria Bilateria Unknown 1
Llo-Mir-31 None MIR-31 GGCAAGA None None OU342995.1 6299944 6300006 + Bilateria Bilateria No 1
Mal-Mir-31 None MIR-31 GGCAAGA None None KV885014.1 317072 317131 + Bilateria Bilateria No 1
Mdo-Mir-31 mdo-mir-31 MIR-31 GGCAAGA MIMAT0004094 MIMAT0026653 6 35734645 35734703 - Bilateria Bilateria No 1
Mgi-Mir-31 None MIR-31 GGCAAGA None None scaffold211 287343 287398 - Bilateria Bilateria No 1
Mml-Mir-31 mml-mir-31 MIR-31 GGCAAGA MIMAT0002379 MIMAT0026577 CM014350.1 62158651 62158709 + Bilateria Bilateria No 1 1
Mmr-Mir-31 mmr-mir-31 MIR-31 GGCAAGA MIMAT0049214 None CM007670.1 43241606 43241664 + Bilateria Bilateria Unknown 1 1
Mmu-Mir-31 mmu-mir-31 MIR-31 GGCAAGA MIMAT0000538 MIMAT0004634 chr4 88910577 88910635 - Bilateria Bilateria No 1
Mom-Mir-31 None MIR-31 GGCAAGA None None JARFOD010000026.1 60267 60326 + Bilateria Bilateria No 1 1
Mun-Mir-31 None MIR-31 GGCAAGA None None LR594633.1 281890374 281890432 - Bilateria Bilateria Unknown 1 1
Neu-Mir-31 None MIR-31 GGCAAGA None None CM051813.1 109071417 109071475 - Bilateria Bilateria Unknown 1
Npo-Mir-31 None MIR-31 GGCAAGA None None JACATO010001526.1 8601 8658 + Bilateria Bilateria Unknown 1 1
Oan-Mir-31 oan-mir-31 MIR-31 GGCAAGA MIMAT0007111 MIMAT0007112 NC_041750.1 18353075 18353133 + Bilateria Bilateria No 1
Obi-Mir-31 None MIR-31 GGCAAGA None None KQ420998 42911 42968 + Bilateria Bilateria No 1
Ocu-Mir-31 ocu-mir-31 MIR-31 GGCAAGA MIMAT0048161 MIMAT0048162 chr1 32242014 32242072 + Bilateria Bilateria No 1 1
Ofu-Mir-31 None MIR-31 GGCAAGA None None CAIIXF020000001.1 6375565 6375625 - Bilateria Bilateria No 1
Ovu-Mir-31 None MIR-31 GGCAAGA None None RXHP01072362.1 30367 30424 + Bilateria Bilateria No 1
Pab-Mir-31 None MIR-31 GGCAAGA None None CM054692.2 36611178 36611236 + Bilateria Bilateria No 1 1
Pau-Mir-31 None MIR-31 GGCAAGA None None NMRA01000041.1 427061 427119 + Bilateria Bilateria Unknown 1
Pbv-Mir-31 pbv-mir-31 MIR-31 GGCAAGA MIMAT0038880 None KE958157.1 9910 9969 - Bilateria Bilateria Unknown
Pca-Mir-31 None MIR-31 GGCAAGA None None KQ715563.1 99342 99403 + Bilateria Bilateria No 1
Pdu-Mir-31 None MIR-31 GGCAAGA None None JAPTHN010000001.1 92405033 92405092 + Bilateria Bilateria No 1
Pfl-Mir-31 None MIR-31 GGCAAGA None None LD342794.1 648341 648399 - Bilateria Bilateria Unknown 1
Pve-Mir-31 None MIR-31 GGCAAGA None None Pve_Chr6 538205384 538205444 + Bilateria Bilateria No 1
Rno-Mir-31 rno-mir-31a MIR-31 GGCAAGA MIMAT0000810 MIMAT0017102 chr5 107206542 107206600 + Bilateria Bilateria No 1 1
Rph-Mir-31 None MIR-31 GGCAAGA None None CM018524.1 42719725 42719786 - Bilateria Bilateria No 1
Sha-Mir-31 None MIR-31 GGCAAGA None None GL842851.1 1681 1739 + Bilateria Bilateria No 1
Sko-Mir-31 sko-mir-31 MIR-31 GGCAAGA MIMAT0009614 None NW_003132358.1 76906 76966 + Bilateria Bilateria Unknown 1
Sma-Mir-31 sma-mir-31 MIR-31 GGCAAGA MIMAT0025038 MIMAT0032136 HE601629.3 3356536 3356599 - Bilateria Bilateria Unknown 1
Snu-Mir-31 None MIR-31 GGCAAGA None None CM049309.1 17683703 17683763 - Bilateria Bilateria Unknown 1
Spt-Mir-31 None MIR-31 GGCAAGA None None QEPC01007029.1 122371 122429 + Bilateria Bilateria Unknown 1
Spu-Mir-31 spu-mir-31 MIR-31 GGCAAGA MIMAT0009657 None AAGJ06000854.1 419468 419530 + Bilateria Bilateria No 1
Sro-Mir-31 None MIR-31 GGCAAGA None None JANVAR010001562.1 65340 65407 - Bilateria Bilateria No
Sto-Mir-31 None MIR-31 GGCAAGA None None BFAA01001118.1 548365 548422 - Bilateria Bilateria Yes 1 1
Tca-Mir-31 tca-mir-31 MIR-31 GGCAAGA MIMAT0008362 MIMAT0019106 LG7 5938429 5938486 + Bilateria Bilateria No 1
Tgu-Mir-31 tgu-mir-31 MIR-31 GGCAAGA MIMAT0014615 None Z 40389641 40389699 + Bilateria Bilateria Unknown 1
Tni-Mir-31 None MIR-31 GGCAAGA None None Un_random 12278863 12278922 - Bilateria Bilateria Unknown 1
War-Mir-31 None MIR-31 GGCAAGA None None WNLI01148837.1 328 387 - Bilateria Bilateria Unknown 1 1
Xbo-Mir-31 None MIR-31 GGCAAGA None None scaffold1506 23204 23263 + Bilateria Bilateria No 1
Xtr-Mir-31 xtr-mir-31a MIR-31 GGCAAGA MIMAT0003679 None chr1 108909690 108909748 - Bilateria Bilateria Unknown 1
Dan-Mir-31-P1 dan-mir-31a MIR-31 GGCAAGA MIMAT0008477 None scaffold_13266 10515624 10515691 + Glossinidae + Drosophilidae Bilateria No 1
Dme-Mir-31-P1 dme-mir-31a MIR-31 GGCAAGA MIMAT0000400 MIMAT0020834 2R 17783806 17783873 - Glossinidae + Drosophilidae Bilateria No 1
Dmo-Mir-31-P1 dmo-mir-31a MIR-31 GGCAAGA MIMAT0008677 None scaffold_6496 11065485 11065551 + Glossinidae + Drosophilidae Bilateria No 1
Dsi-Mir-31-P1 dsi-mir-31a MIR-31 GGCAAGA MIMAT0008886 None 2R 14317360 14317427 - Glossinidae + Drosophilidae Bilateria No 1
Dya-Mir-31-P1 dya-mir-31a MIR-31 GGCAAGA MIMAT0009103 None 2R 15512035 15512102 + Glossinidae + Drosophilidae Bilateria No 1
Gpa-Mir-31-P1 None MIR-31 GGCAAGA None None Scaffold11 1615018 1615090 + Glossinidae + Drosophilidae Bilateria No 1
Dan-Mir-31-P2 dan-mir-31b MIR-31 GGCAAGA MIMAT0008469 None scaffold_13047 712447 712538 - Glossinidae + Drosophilidae Bilateria No
Dme-Mir-31-P2 dme-mir-31b MIR-31 GGCAAGA MIMAT0000389 MIMAT0020825 X 8993317 8993418 - Glossinidae + Drosophilidae Bilateria No
Dmo-Mir-31-P2 dmo-mir-31b MIR-31 GGCAAGA MIMAT0008639 None scaffold_6473 5711164 5711265 + Glossinidae + Drosophilidae Bilateria Unknown 1
Dsi-Mir-31-P2 dsi-mir-31b MIR-31 GGCAAGA MIMAT0008878 None X 8424731 8424832 - Glossinidae + Drosophilidae Bilateria No
Dya-Mir-31-P2 dya-mir-31b MIR-31 GGCAAGA MIMAT0009104 None X 12425708 12425809 + Glossinidae + Drosophilidae Bilateria No
Gpa-Mir-31-P2a None MIR-31 GGCAAGA None None Scaffold133 89437 89510 + G. pallidipes Bilateria Unknown
Gpa-Mir-31-P2b None MIR-31 GGCAAGA None None Scaffold133 89437 89510 + G. pallidipes Bilateria Unknown
Pmi-Mir-31-P3 pmi-mir-31-2 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 21164 21227 + P. miniata Bilateria No 1 1
Pmi-Mir-31-P4 pmi-mir-31-1 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 21556 21616 + P. miniata Bilateria No
Pmi-Mir-31-P5a pmi-mir-31-3 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 22547 22607 + P. miniata Bilateria No 1
Pmi-Mir-31-P5b pmi-mir-31-3 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 22547 22607 + P. miniata Bilateria No 1
Lan-Mir-31-P6 None MIR-31 GGCAAGA None None LFEI01001401 4745 4804 + L. anatina Bilateria Unknown 1 1
Lan-Mir-31-P7 None MIR-31 GGCAAGA None None LFEI01000149 78473 78532 - L. anatina Bilateria Unknown 1 1
Loc-Mir-31-P8 None MIR-31 GGCAAGA None None LG4 45815911 45815970 + L. oculatus Bilateria No 1
Loc-Mir-31-P9 None MIR-31 GGCAAGA None None LG4 59481960 59482019 + L. oculatus Bilateria No
Gja-Mir-31-P10 None MIR-31 GGCAAGA None None NW_015164226.1 388838 388896 - G. japonicus Bilateria No 1
Gja-Mir-31-P11 None MIR-31 GGCAAGA None None NW_015201646.1 532 590 + G. japonicus Bilateria Unknown 1
Gja-Mir-31-P12 None MIR-31 GGCAAGA None None NW_015164669.1 1784561 1784619 + G. japonicus Bilateria Unknown 1
Lpo-Mir-31-P13 None MIR-31 GGCAAGA None None NW_013665962.1 603790 603849 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-31-P14 None MIR-31 GGCAAGA None None NW_013666545.1 334431 334488 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-31-P15 None MIR-31 GGCAAGA None None NW_013665624.1 176533 176592 + L. polyphemus Bilateria Unknown 1
Lpo-Mir-31-P16 None MIR-31 GGCAAGA None None NW_013674433.1 14547 14606 + L. polyphemus Bilateria Unknown 1
Xla-Mir-31-P17 None MIR-31 GGCAAGA None None NC_030724.1 118648966 118649024 - X. laevis Bilateria No 1
Xla-Mir-31-P18 None MIR-31 GGCAAGA None None NC_030725.1 98082247 98082304 - X. laevis Bilateria Unknown 1
Sme-Mir-31-P19 sme-mir-31a MIR-31 GGCAAGA MIMAT0003979 MIMAT0012104 NNSW01000098_dd_Smes_g4_98 1507690 1507758 - S. mediterranea Bilateria No 1
Sme-Mir-31-P20 sme-mir-31b-1 MIR-31 GGCAAGA MIMAT0003980 MIMAT0011413 NNSW01000043_dd_Smes_g4_43 2461898 2461958 - S. mediterranea Bilateria No 1
Bko-Mir-31-P21 None MIR-31 GGCAAGA None None PJRA01000011.1 798985 799044 - B. koreanus Bilateria No 1
Bko-Mir-31-P22 None MIR-31 GGCAAGA None None PJRA01000077.1 1300410 1300469 - B. koreanus Bilateria No 1
Pcr-Mir-31-P23 None MIR-31 GGCAAGA None None CAJQUW010004489.1 308926 308986 + Bilateria Bilateria No 1
Pcr-Mir-31-P24 None MIR-31 GGCAAGA None None CAJQUW010014077.1 37987 38047 - Bilateria Bilateria No 1
Cel-Mir-73-P1 cel-mir-73 MIR-73 GGCAAGA MIMAT0020319 MIMAT0000045 chrX 2368787 2368848 + Caenorhabditis Caenorhabditis No 1
Cbr-Mir-73-P1a cbr-mir-73a MIR-73 GGCAAGA None MIMAT0000482 X 4426903 4426964 - C. briggsae Caenorhabditis No
Cbr-Mir-73-P1b cbr-mir-73b MIR-73 GGCAAGA None MIMAT0011464 I 6796238 6796300 - C. briggsae Caenorhabditis No
Cel-Mir-73-P2 cel-mir-74 MIR-73 GGCAAGA MIMAT0020320 MIMAT0000046 chrX 2369062 2369124 + Caenorhabditis Caenorhabditis No
Cbr-Mir-73-P2a cbr-mir-74b MIR-73 GGACUUC MIMAT0011501 MIMAT0011502 X 4426739 4426799 - C. briggsae Caenorhabditis No
Cbr-Mir-73-P2b cbr-mir-74a MIR-73 GGCAAGA None MIMAT0000483 X 4426608 4426674 - C. briggsae Caenorhabditis No
Cbr-Mir-73-P3a cbr-mir-2225 MIR-73 GGCAAGA MIMAT0011497 MIMAT0011498 I 6952728 6952794 - C. briggsae Caenorhabditis No

(red - mature/co-mature, blue - star)

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