MirGeneDB 2.1
MirGeneDB ID

Gja-Mir-31-P11

Family name MIR-31 (all species)
Seed GGCAAGA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-31-P10  Gja-Mir-31-P12 
Orthologues Aae-Mir-31  Aca-Mir-31  Ami-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Ebu-Mir-31  Efe-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Hme-Mir-31  Hsa-Mir-31  Isc-Mir-31  Lch-Mir-31  Lgi-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mml-Mir-31  Mmu-Mir-31  Mun-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ovu-Mir-31  Pbv-Mir-31  Pfl-Mir-31  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Spt-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) G. japonicus
Node of Origin (family) Bilateria
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015201646.1: 532-590 [+]
Precursor
(pre-Mir +30nt flank)
GAGGAUUCCUUUUAGUAAGAGCUGGUGGGGAGGCAAGAUGUUGGCAUAGCUGAUGCACUAAGAACCUCUUAUGCCAACAUGUUGCCCUCUUUCCUGACUGUUUGCUGCAAACAUGCUGG
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Structure
        10         20        30         40        50         
GAGGAUUCCUUUUAGUAAG-  CU  UG    -|    G            CUGAUGCAC 
                    AG  GG  GGGA GGCAA AUGUUGGCAUAG         \
                    UC  UC  UUCU CCGUU UACAACCGUAUU         U
GGUCGUACAAACGUCGUUUG  AG  CU    C^    G            CUCCAAGAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-31-P11_5p
mirBase accessionNone
Sequence 
0- AGGCAAGAUGUUGGCAUAGCUGA -23
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Star sequence

Gja-Mir-31-P11_3p* (predicted)
mirBase accessionNone
Sequence 
38- UUAUGCCAACAUGUUGCCCUC -59
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