Mir-31

MirGeneDB ID

Cel-Mir-31

Family name

MIR-31 (all species)

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-72

Paralogues

Orthologues

Aae-Mir-31 Aca-Mir-31 Aga-Mir-31 Agr-Mir-31 Ami-Mir-31 Asu-Mir-31 Ava-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bko-Mir-31-P21 Bko-Mir-31-P22 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cfa-Mir-31 Cin-Mir-31 Cja-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dan-Mir-31-P1 Dan-Mir-31-P2 Dgr-Mir-31 Dlo-Mir-31 Dma-Mir-31 Dme-Mir-31-P1 Dme-Mir-31-P2 Dmo-Mir-31-P1 Dmo-Mir-31-P2 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Dsi-Mir-31-P1 Dsi-Mir-31-P2 Dya-Mir-31-P1 Dya-Mir-31-P2 Eba-Mir-31 Ebu-Mir-31 Eca-Mir-31 Efe-Mir-31 Egr-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gja-Mir-31-P10 Gja-Mir-31-P11 Gja-Mir-31-P12 Gmo-Mir-31 Gpa-Mir-31-P1 Gpa-Mir-31-P2a Gpa-Mir-31-P2b Gsa-Mir-31 Hme-Mir-31 Hmi-Mir-31 Hru-Mir-31 Hsa-Mir-31 Isc-Mir-31 Laf-Mir-31 Lan-Mir-31-P6 Lan-Mir-31-P7 Lch-Mir-31 Lgi-Mir-31 Llo-Mir-31 Loc-Mir-31-P8 Loc-Mir-31-P9 Lpo-Mir-31-P13 Lpo-Mir-31-P14 Lpo-Mir-31-P15 Lpo-Mir-31-P16 Mal-Mir-31 Mdo-Mir-31 Mgi-Mir-31 Mml-Mir-31 Mmr-Mir-31 Mmu-Mir-31 Mom-Mir-31 Mun-Mir-31 Neu-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ofu-Mir-31 Ovu-Mir-31 Pab-Mir-31 Pau-Mir-31 Pbv-Mir-31 Pca-Mir-31 Pcr-Mir-31-P23 Pcr-Mir-31-P24 Pdu-Mir-31 Pfl-Mir-31 Pmi-Mir-31-P3 Pmi-Mir-31-P4 Pmi-Mir-31-P5a Pmi-Mir-31-P5b Pve-Mir-31 Rno-Mir-31 Rph-Mir-31 Sha-Mir-31 Sko-Mir-31 Sma-Mir-31 Sme-Mir-31-P19 Sme-Mir-31-P20 Snu-Mir-31 Spt-Mir-31 Spu-Mir-31 Sro-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 War-Mir-31 Xbo-Mir-31 Xla-Mir-31-P17 Xla-Mir-31-P18 Xtr-Mir-31

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(ce11)

chrII: 2452854-2452919 [+] UCSC Ensembl

Seed

GGCAAGA

Precursor
(pre-Mir +30nt flank)

UACUAUUCUGCUGAAGGUCCCGUCAGAGCUAGGCAAGAUGUUGGCAUAGCUGAAUGAUCGCUAUAACAACUAUCAGCUUCGCCACAUUCUGCCACGCACUGAUGUGAGGACCUGAUUUUUUGAAAA

Get precursor sequence

Structure

        10          20        30        40        50        60   
UACUAUUCUGCUGAAGG--| C      A  UA    AG    U   AU      AUGAUCGCU 
                   UC CGUCAG GC  GGCA  AUGU GGC  AGCUGA         \
                   AG GUAGUC CG  CCGU  UACA CCG  UCGACU         A
AAAAGUUUUUUAGUCCAGG^ U      A  CA    CU    -   CU      AUCAACAAU 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Mature sequence

Cel-Mir-31_5p

mirBase accession

MIMAT0000044

Sequence

0- AGGCAAGAUGUUGGCAUAGCUGA -23

Get sequence

Proposed targets

microrna.org: MIMAT0000044
TargetScanWorm: cel-miR-72

Star sequence

Cel-Mir-31_3p*

mirBase accession

MIMAT0020318

Sequence

44- AGCUUCGCCACAUUCUGCCACG -66

Get sequence