MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-31

Family name MIR-31 (all species)
Seed GGCAAGA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-31
Paralogues
Orthologues Aae-Mir-31  Aca-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dan-Mir-31-P1  Dan-Mir-31-P2  Dma-Mir-31  Dme-Mir-31-P1  Dme-Mir-31-P2  Dmo-Mir-31-P1  Dmo-Mir-31-P2  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Dsi-Mir-31-P1  Dsi-Mir-31-P2  Dya-Mir-31-P1  Dya-Mir-31-P2  Ebu-Mir-31  Efe-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gja-Mir-31-P10  Gja-Mir-31-P11  Gja-Mir-31-P12  Gmo-Mir-31  Hme-Mir-31  Hsa-Mir-31  Isc-Mir-31  Lan-Mir-31-P6  Lan-Mir-31-P7  Lch-Mir-31  Lgi-Mir-31  Loc-Mir-31-P8  Loc-Mir-31-P9  Lpo-Mir-31-P13  Lpo-Mir-31-P14  Lpo-Mir-31-P15  Lpo-Mir-31-P16  Mal-Mir-31  Mdo-Mir-31  Mml-Mir-31  Mmu-Mir-31  Mun-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ovu-Mir-31  Pbv-Mir-31  Pfl-Mir-31  Pmi-Mir-31-P3  Pmi-Mir-31-P4  Pmi-Mir-31-P5a  Pmi-Mir-31-P5b  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Sme-Mir-31-P19  Sme-Mir-31-P20  Spt-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  Xbo-Mir-31  Xla-Mir-31-P17  Xla-Mir-31-P18  Xtr-Mir-31 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017714378.1: 656460-656518 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAGAACUUCCCUUAUUCAGAGCUAGAGAGGAGGCAAGAUGUUGGCAUAGCUGUUGACCUAAGAACCUGCUAUGCCAACAUCUUGUCAUCUUUCUUGUCUACAUGCAGCAGGGCAAACUU
Get precursor sequence
Structure
        10           20        30        40        50         
AAGAACUUCCCUUAUUC---|  G U      GA                   UGUUGACC 
                    AGA C AGAGAG  GGCAAGAUGUUGGCAUAGC        \
                    UCU G UCUUUC  CUGUUCUACAACCGUAUCG        U
UUCAAACGGGACGACGUACA^  - U      UA                   UCCAAGAA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-31_5p

mirBase accessionMIMAT0038088
Sequence
0- AGGCAAGAUGUUGGCAUAGCUGU -23
Get sequence
Star sequence

Ami-Mir-31_3p*

mirBase accessionMIMAT0038089
Sequence
36- UGCUAUGCCAACAUCUUGUCAUC -59
Get sequence