Mir-31-P1

MirGeneDB ID

Dsi-Mir-31-P1

Family name

MIR-31 (all species)

Seed

GGCAAGA

Species

Fruit fly (Drosophila simulans)

MiRBase ID

dsi-mir-31a

Paralogues

Dsi-Mir-31-P2

Orthologues

Aae-Mir-31 Aca-Mir-31 Ami-Mir-31 Asu-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cgi-Mir-31 Cin-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dan-Mir-31-P1 Dma-Mir-31 Dme-Mir-31-P1 Dmo-Mir-31-P1 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Dya-Mir-31-P1 Ebu-Mir-31 Efe-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gmo-Mir-31 Hme-Mir-31 Hsa-Mir-31 Isc-Mir-31 Lch-Mir-31 Lgi-Mir-31 Mal-Mir-31 Mdo-Mir-31 Mml-Mir-31 Mmu-Mir-31 Mun-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ovu-Mir-31 Pbv-Mir-31 Pfl-Mir-31 Rno-Mir-31 Sha-Mir-31 Sko-Mir-31 Spt-Mir-31 Spu-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 Xbo-Mir-31 Xtr-Mir-31

Node of Origin (locus)

Drosophila

Node of Origin (family)

Bilateria

Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)

2R: 14317360-14317427 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUCGAUCGUAUAGCACCUCCGUUGGUAAAUUGGCAAGAUGUCGGCAUAGCUGACGUUGAAAAGCGAUUUUGAAGAGCGCUAUGCUGCAUCUAGUCAGUUGUUCAAUGGAACAGUCAGCGAGAUCGAAC

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Structure

        10          20        30        40        50        60    
AUCGAUCGUAUAGCACC--|       UA       A     U         UGACGUUGAAAAG 
                   UCCGUUGG  AAUUGGC AGAUG CGGCAUAGC             \
                   AGGUAACU  UUGACUG UCUAC GUCGUAUCG             C
CAAGCUAGAGCGACUGACA^       UG       A     -         CGAGAAGUUUUAG 
      120       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

He	Wh

Mature sequence

Dsi-Mir-31-P1_5p

mirBase accession

MIMAT0008886

Sequence

0- UGGCAAGAUGUCGGCAUAGCUGA -23

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Star sequence

Dsi-Mir-31-P1_3p*

mirBase accession

None

Sequence

46- CGCUAUGCUGCAUCUAGUCAGU -68

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