Mir-31-P4

MirGeneDB ID

Pmi-Mir-31-P4

Family name

MIR-31 (all species)

Species

Bat starfish (Patiria miniata)

MiRBase ID

pmi-mir-31-1

Paralogues

Pmi-Mir-31-P3 Pmi-Mir-31-P5a Pmi-Mir-31-P5b

Orthologues

Aae-Mir-31 Aca-Mir-31 Aga-Mir-31 Agr-Mir-31 Ami-Mir-31 Asu-Mir-31 Ava-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cin-Mir-31 Cja-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dgr-Mir-31 Dlo-Mir-31 Dma-Mir-31 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Eba-Mir-31 Ebu-Mir-31 Eca-Mir-31 Efe-Mir-31 Egr-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gmo-Mir-31 Gsa-Mir-31 Hme-Mir-31 Hmi-Mir-31 Hru-Mir-31 Hsa-Mir-31 Isc-Mir-31 Laf-Mir-31 Lch-Mir-31 Lgi-Mir-31 Llo-Mir-31 Mal-Mir-31 Mdo-Mir-31 Mgi-Mir-31 Mml-Mir-31 Mmr-Mir-31 Mmu-Mir-31 Mom-Mir-31 Mun-Mir-31 Neu-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ofu-Mir-31 Ovu-Mir-31 Pab-Mir-31 Pau-Mir-31 Pbv-Mir-31 Pca-Mir-31 Pdu-Mir-31 Pfl-Mir-31 Pve-Mir-31 Rno-Mir-31 Rph-Mir-31 Sha-Mir-31 Sko-Mir-31 Sma-Mir-31 Snu-Mir-31 Spt-Mir-31 Spu-Mir-31 Sro-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 War-Mir-31 Xbo-Mir-31 Xtr-Mir-31

Node of Origin (locus)

P. miniata

Node of Origin (family)

Bilateria

Genome context
(Pmin1)

JH770732.1: 21556-21616 [+]

Clustered miRNAs
(< 50kb from Mir-31-P4)

Mir-31-P3 JH770732.1: 21164-21227 [+]
Mir-31-P4 JH770732.1: 21556-21616 [+]
Mir-31-P5a JH770732.1: 22547-22607 [+]
Mir-31-P5b JH770732.1: 22547-22607 [+]

Seed

GGCAAGA

Precursor
(pre-Mir +30nt flank)

AGAACAUGUUCAAAUUAGCGAGUGUAGAAAAGGCAAGAUGUUGGCAUAGCUGUUGUUGCCAAAAAACCAGCUGUACCUACAUAUUGCCAUUUGUCCACUUGCCCAAUCUUUGCAGUUGUCG

Get precursor sequence

Structure

        10          20        30        40        50          
AGAACAUGUUCAAAUUA--|      UAG   A     G    U  C       UUGUUGC 
                   GCGAGUG   AAA GGCAA AUGU GG AUAGCUG       \
                   CGUUCAC   UUU CCGUU UACA CC UGUCGAC       C
GCUGUUGACGUUUCUAACC^      CUG   A     A    U  A       CAAAAAA 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Em	To

Mature sequence

Pmi-Mir-31-P4_5p

mirBase accession

MIMAT0032147

Sequence

0- AGGCAAGAUGUUGGCAUAGCUG -22

Get sequence

Star sequence

Pmi-Mir-31-P4_3p*

mirBase accession

None

Sequence

39- GCUGUACCUACAUAUUGCCAUU -61

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