Mir-31-P22

MirGeneDB ID

Bko-Mir-31-P22

Family name

MIR-31 (all species)

Species

Monogonont Rotifer 2 (Brachionus koreanus)

MiRBase ID

Paralogues

Bko-Mir-31-P21

Orthologues

Aae-Mir-31 Aca-Mir-31 Aga-Mir-31 Agr-Mir-31 Ami-Mir-31 Asu-Mir-31 Ava-Mir-31 Bfl-Mir-31 Bge-Mir-31 Bla-Mir-31 Bpl-Mir-31 Bta-Mir-31 Cbr-Mir-31 Cel-Mir-31 Cfa-Mir-31 Cin-Mir-31 Cja-Mir-31 Cli-Mir-31 Cmi-Mir-31 Cpi-Mir-31 Cpo-Mir-31 Cte-Mir-31 Dgr-Mir-31 Dlo-Mir-31 Dma-Mir-31 Dno-Mir-31 Dpu-Mir-31 Dre-Mir-31 Eba-Mir-31 Ebu-Mir-31 Eca-Mir-31 Efe-Mir-31 Egr-Mir-31 Esc-Mir-31 Ete-Mir-31 Gga-Mir-31 Gmo-Mir-31 Gsa-Mir-31 Hme-Mir-31 Hmi-Mir-31 Hru-Mir-31 Hsa-Mir-31 Isc-Mir-31 Laf-Mir-31 Lch-Mir-31 Lgi-Mir-31 Llo-Mir-31 Mal-Mir-31 Mdo-Mir-31 Mgi-Mir-31 Mml-Mir-31 Mmr-Mir-31 Mmu-Mir-31 Mom-Mir-31 Mun-Mir-31 Neu-Mir-31 Npo-Mir-31 Oan-Mir-31 Obi-Mir-31 Ocu-Mir-31 Ofu-Mir-31 Ovu-Mir-31 Pab-Mir-31 Pau-Mir-31 Pbv-Mir-31 Pca-Mir-31 Pdu-Mir-31 Pfl-Mir-31 Pve-Mir-31 Rno-Mir-31 Rph-Mir-31 Sha-Mir-31 Sko-Mir-31 Sma-Mir-31 Snu-Mir-31 Spt-Mir-31 Spu-Mir-31 Sro-Mir-31 Sto-Mir-31 Tca-Mir-31 Tgu-Mir-31 Tni-Mir-31 War-Mir-31 Xbo-Mir-31 Xtr-Mir-31

Node of Origin (locus)

B. koreanus

Node of Origin (family)

Bilateria

Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic)

PJRA01000077.1: 1300410-1300469 [-] Ensembl

Seed

GGCAAGA

Precursor
(pre-Mir +30nt flank)

UCUUUCACUGAACUGAAAAUUUGAGCUAUUAGGCAAGAUGCUGGCAUAGCUAAUAGUAAAAUUAUUUAGUUAUGCUUCAUCCCGGCCCAAUUGCUUUAAUGAGCAACUUCGAUAAAGAAA

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Structure

        10          20        30         40        50         
UCUUUCACUGAACUGAAA--   U    U   A   AA-|   CU           UAGUA 
                    AUU GAGC AUU GGC   GAUG  GGCAUAGCUAA     A
                    UAA UUCG UAA CCG   CUAC  UCGUAUUGAUU     A
AAAGAAAUAGCUUCAACGAG   U    U   C   GCC^   U-           UAUUA 
.       110       100        90        80         70        60

Deep sequencing

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Comment

There is a second Drosha cut -1 on the 5p arm.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To	To

Mature sequence

Bko-Mir-31-P22_5p

mirBase accession

None

Sequence

0- AGGCAAGAUGCUGGCAUAGCUAAU -24

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Star sequence

Bko-Mir-31-P22_3p*

mirBase accession

None

Sequence

37- AGUUAUGCUUCAUCCCGGCCCAA -60

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