MirGeneDB 2.1
MirGeneDB ID

Sme-Mir-31-P20

Family name MIR-31 (all species)
Seed GGCAAGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-31b-1
Paralogues Sme-Mir-31-P19 
Orthologues Aae-Mir-31  Aca-Mir-31  Ami-Mir-31  Asu-Mir-31  Bfl-Mir-31  Bge-Mir-31  Bla-Mir-31  Bpl-Mir-31  Bta-Mir-31  Cbr-Mir-31  Cel-Mir-31  Cfa-Mir-31  Cgi-Mir-31  Cin-Mir-31  Cli-Mir-31  Cmi-Mir-31  Cpi-Mir-31  Cpo-Mir-31  Cte-Mir-31  Dma-Mir-31  Dno-Mir-31  Dpu-Mir-31  Dre-Mir-31  Ebu-Mir-31  Efe-Mir-31  Esc-Mir-31  Ete-Mir-31  Gga-Mir-31  Gmo-Mir-31  Hme-Mir-31  Hsa-Mir-31  Isc-Mir-31  Lch-Mir-31  Lgi-Mir-31  Mal-Mir-31  Mdo-Mir-31  Mml-Mir-31  Mmu-Mir-31  Mun-Mir-31  Npo-Mir-31  Oan-Mir-31  Obi-Mir-31  Ocu-Mir-31  Ovu-Mir-31  Pbv-Mir-31  Pfl-Mir-31  Rno-Mir-31  Sha-Mir-31  Sko-Mir-31  Spt-Mir-31  Spu-Mir-31  Sto-Mir-31  Tca-Mir-31  Tgu-Mir-31  Tni-Mir-31  Xbo-Mir-31  Xtr-Mir-31 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000043_dd_Smes_g4_43: 2461898-2461958 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAUUAUUAUUAUUAUAUUGAUAAUGACAAGGCAAGAUGCUGGCAUAGCUGAUAAACUAUUUAUUACCAGCUAUUCAGGAUCUUUCCCUGAAUAUAUCAAUUAUUCUUCCGUUAAUAAAU
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Structure
        10          20        30        40        50        60
AUCAUUAUUAUUAUUAU--|      AUGA  A  C     G    C       AUAAACU 
                   AUUGAUA    CA GG AAGAU CUGG AUAGCUG       A
                   UAACUAU    GU CC UUCUA GACU UAUCGAC       U
UAAAUAAUUGCCUUCUUAU^      AUAA  C  U     G    -       CAUUAUU 
 .       110       100        90        80         70
Deep sequencing
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CommentThere is a 1 nt snp at the 3' end of the 3p arm.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-31-P20_5p
mirBase accessionMIMAT0003980
Sequence 
0- AGGCAAGAUGCUGGCAUAGCUGA -23
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Star sequence

Sme-Mir-31-P20_3p*
mirBase accessionMIMAT0011413
Sequence 
39- AGCUAUUCAGGAUCUUUCCCUG -61
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