MirGeneDB ID | Xla-Mir-31-P17 |
Family name |
MIR-31 (all species) |
Seed |
GGCAAGA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
|
Paralogues |
Xla-Mir-31-P18
|
Orthologues |
Aae-Mir-31
Aca-Mir-31
Ami-Mir-31
Asu-Mir-31
Bfl-Mir-31
Bge-Mir-31
Bla-Mir-31
Bpl-Mir-31
Bta-Mir-31
Cbr-Mir-31
Cel-Mir-31
Cfa-Mir-31
Cgi-Mir-31
Cin-Mir-31
Cli-Mir-31
Cmi-Mir-31
Cpi-Mir-31
Cpo-Mir-31
Cte-Mir-31
Dma-Mir-31
Dno-Mir-31
Dpu-Mir-31
Dre-Mir-31
Ebu-Mir-31
Efe-Mir-31
Esc-Mir-31
Ete-Mir-31
Gga-Mir-31
Gmo-Mir-31
Hme-Mir-31
Hsa-Mir-31
Isc-Mir-31
Lch-Mir-31
Lgi-Mir-31
Mal-Mir-31
Mdo-Mir-31
Mml-Mir-31
Mmu-Mir-31
Mun-Mir-31
Npo-Mir-31
Oan-Mir-31
Obi-Mir-31
Ocu-Mir-31
Ovu-Mir-31
Pbv-Mir-31
Pfl-Mir-31
Rno-Mir-31
Sha-Mir-31
Sko-Mir-31
Spt-Mir-31
Spu-Mir-31
Sto-Mir-31
Tca-Mir-31
Tgu-Mir-31
Tni-Mir-31
Xbo-Mir-31
Xtr-Mir-31
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030724.1: 118648966-118649024 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUUCUUAAAUCAACUUAGUACUUGAGAGAAGGCAAGAUGUUGGCAAAGCUGUAGCAUCAGAAACCUGCUGUGCCAUCAUAUUGCCAUCUUUCUUGUCUACCAGCACCAGAGAAUUUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GCUUCUUAAAUCAACUU---| U UU A G U A UGUAGCAU
AG AC GAGAGA GGCAA AUG UGGCA AGC \
UC UG CUUUCU CCGUU UAC ACCGU UCG C
UAUUUAAGAGACCACGACCA^ - UU A A U G UCCAAAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Xla-Mir-31-P17_5p |
mirBase accession | None |
Sequence |
0- AGGCAAGAUGUUGGCAAAGCUGU -23
Get sequence
|
Star sequence |
Xla-Mir-31-P17_3p* |
mirBase accession | None |
Sequence |
36- UGCUGUGCCAUCAUAUUGCCAUC -59
Get sequence
|