MirGeneDB ID | Cbr-Mir-73-P1b |
Family name |
MIR-73 (all species) |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-73b
|
Paralogues |
Cbr-Mir-73-P1a
Cbr-Mir-73-P2a
Cbr-Mir-73-P2b
Cbr-Mir-73-P3a
Cbr-Mir-73-P3b
|
Orthologues |
Cel-Mir-73-P1
|
Node of Origin (locus) |
C. briggsae
|
Node of Origin (family) |
Caenorhabditis
|
Genome context (CB4) |
I: 6796238-6796300 [-]
Ensembl
|
Seed |
GGCAAGA |
Precursor (pre-Mir +30nt flank) |
UUCGCCUAAAAAACGUCCCAAAAUUCCGAUCCGGCUUCCACAUCGAGCCUCAGCUAGAUCCAUAACUUGCUGGCAAGAUGUUGGCAGUCGCAUUGGAUAAAGGAGACACUUGAAAUAUUAGUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUCGCCUAAAAAACGUC---| AAAAU C U - GA UC UAGAUC
CC UCCGAU CGGCU CCA CAUC GCC AGC C
GG AGGUUA GCUGA GGU GUAG CGG UCG A
UUGAUUAUAAAGUUCACAGA^ AAAU- C C U AA -- UUCAAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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Star sequence |
Cbr-Mir-73-P1b_5p* |
mirBase accession | None |
Sequence |
0- CCGGCUUCCACAUCGAGCCUCAGC -24
Get sequence
|
Mature sequence |
Cbr-Mir-73-P1b_3p |
mirBase accession | MIMAT0011464 |
Sequence |
40- UGGCAAGAUGUUGGCAGUCGCAU -63
Get sequence
|