Mir-26-P1

MirGeneDB ID

Xtr-Mir-26-P1

Family name

MIR-26 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

Paralogues

Xtr-Mir-26-P2c Xtr-Mir-26-P2d Xtr-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chrUn_NW_016683377v1: 970639-970699 [+] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

CACAGGAAUGCGGAACUGGCAGUGGCCCGGUUCAAGUAAUCCAGGAUAGGCUGUUCACAUUCUGCGUGGCCUAUUCUUGAUUACUUGCAUUGGGAGGCAGCUAUUCACGUCGGCGAGCUCC

Get precursor sequence

Structure

        10          20        30        40        50          
CACAGGAAUGCGGAACU--|  A  GG      U         C          GUUCACA 
                   GGC GU  CCCGGU CAAGUAAUC AGGAUAGGCU       \
                   UCG CG  GGGUUA GUUCAUUAG UCUUAUCCGG       U
CCUCGAGCGGCUGCACUUA^  A  GA      C         U          UGCGUCU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-26-P1_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Xtr-Mir-26-P1_3p*

mirBase accession

None

Sequence

39- CCUAUUCUUGAUUACUUGCAUU -61

Get sequence