MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-26-P2c

Family name MIR-26 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-26-2
Paralogues Xtr-Mir-26-P1  Xtr-Mir-26-P2d  Xtr-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cja-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Eca-Mir-26-P2  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Hsa-Mir-26-P2  Laf-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmr-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Neu-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pab-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2 
Node of Origin (locus) X. tropicalis
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr9: 77064704-77064764 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-26-P2c)		 Mir-26-P2c chr9: 77064704-77064764 [+] UCSC Ensembl
Mir-26-P2d chr9: 77070820-77070880 [+] UCSC Ensembl
Seed UCAAGUA
Precursor
(pre-Mir +30nt flank)		 
AGUGACGAGGAAUCCUGAUUGGGCGCUCGCUUCAAGUAAUCCAGGAUAGGCUGUAAUGUCUCCUGUCAGCCUUUUCUCGAUUACUUGGGACCAGAGCCAAUCUUUUUCAACGAAGGAACGC
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Structure
        10        20          30        40        50          
AGUGACGAGGAAUCCUGAUUG--|  G  CGC           C    U     GUAAUGU 
                       GGC CU   UUCAAGUAAUC AGGA AGGCU       \
                       CCG GA   GGGUUCAUUAG UCUU UCCGA       C
CGCAAGGAAGCAACUUUUUCUAA^  A  CCA           C    U     CUGUCCU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-26-P2c_5p
mirBase accessionMIMAT0003569
Sequence 
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Proposed targets TargetScanVert: xtr-miR-26
Star sequence

Xtr-Mir-26-P2c_3p*
mirBase accessionNone
Sequence 
39- CCUUUUCUCGAUUACUUGGGAC -61
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