Mir-26-P2

MirGeneDB ID

Cpo-Mir-26-P2

Family name

MIR-26 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-26b

Paralogues

Cpo-Mir-26-P1 Cpo-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Dno-Mir-26-P2 Dre-Mir-26-P2a Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2 Tni-Mir-26-P2b Xla-Mir-26-P2e Xla-Mir-26-P2f Xtr-Mir-26-P2c Xtr-Mir-26-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_153: 48442-48498 [-] UCSC

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

UCGCCCCGCAUCCCCUUGCCCGGGACCCAGUUCAAGUAAUUCAGGAUAGGUUGUGUGCUGUCCAGCCUGUUCUCCAUUACUUGGCUCGGGGGCCGGCGCCCUGCAGCCUUGGGGUGA

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Structure

        10          20         30        40        50        
UCGCCCCGCAUCCCCUU-  -    GA   -|  U        UC          GUGUG 
                  GC CCGG  CCC AGU CAAGUAAU  AGGAUAGGUU     \
                  CG GGCC  GGG UCG GUUCAUUA  UCUUGUCCGA     C
AGUGGGGUUCCGACGUCC  C    GG   C^  -        CC          CCUGU 
     110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Mature sequence

Cpo-Mir-26-P2_5p

mirBase accession

MIMAT0046888

Sequence

0- UUCAAGUAAUUCAGGAUAGGUU -22

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Star sequence

Cpo-Mir-26-P2_3p*

mirBase accession

MIMAT0046889

Sequence

35- CCUGUUCUCCAUUACUUGGCUC -57

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