Mir-26-P2b

MirGeneDB ID

Gmo-Mir-26-P2b

Family name

MIR-26 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-26b

Paralogues

Gmo-Mir-26-P1a Gmo-Mir-26-P1b Gmo-Mir-26-P2a Gmo-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2 Tni-Mir-26-P2b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2973: 151876-151939 [+] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

UUGUAGCAGUGAAUUCUGGGCCGGGCCUGGUUCAAGUAAUCCAGGAUAGGUUUGUUCUGACAAGCAGUAAAGCCUAUUCAGGAUGACUUGUUUCAGGAACGCCGCCCUCACUCCACGCCACGGA

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Structure

        10        20          30        40        50        60 
UUGUAGCAGUGAAUUCUG   --| GG     UU     A    A         UGUUCUGA 
                  GGC  CG  CCUGG  CAAGU AUCC GGAUAGGUU        C
                  CCG  GC  GGACU  GUUCA UAGG CUUAUCCGA        A
AGGCACCGCACCUCACUC   CC^ AA     UU     G    A         AAUGACGA 
  120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-26-P2b_5p

mirBase accession

MIMAT0044207

Sequence

0- UUCAAGUAAUCCAGGAUAGGUU -22

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Star sequence

Gmo-Mir-26-P2b_3p*

mirBase accession

None

Sequence

42- CCUAUUCAGGAUGACUUGUUUC -64

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