Mir-26-P2

MirGeneDB ID

Sha-Mir-26-P2

Family name

MIR-26 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-26-P1 Sha-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Dre-Mir-26-P2a Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2 Tni-Mir-26-P2b Xla-Mir-26-P2e Xla-Mir-26-P2f Xtr-Mir-26-P2c Xtr-Mir-26-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL849891.1: 2062376-2062432 [-] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

CUCUCACCCCACUCGGUGGCCGGGACCCGUUUCAAGUAAUCCAGGAUAGGCUGUUUUCUCUUUAGCCUGUUCUCCAUUACUUGGUUCGGGGGCCGGUACUCAGCAUCACUUGGGGUG

Get precursor sequence

Structure

        10          20        30        40        50        
CUCUCACCCCACUCGGUG--|    GA    UU         CC          GUUUU 
                    GCCGG  CCCG  UCAAGUAAU  AGGAUAGGCU     \
                    UGGCC  GGGC  GGUUCAUUA  UCUUGUCCGA     C
GUGGGGUUCACUACGACUCA^    GG    UU         CC          UUUCU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-26-P2_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Sha-Mir-26-P2_3p*

mirBase accession

None

Sequence

35- CCUGUUCUCCAUUACUUGGUUC -57

Get sequence