Mir-26-P4

MirGeneDB ID

Sha-Mir-26-P4

Family name

MIR-26 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-26a

Paralogues

Sha-Mir-26-P1 Sha-Mir-26-P2

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL861726.1: 615061-615119 [-] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

CGGAAAGAUCCAGCAAAGGCUGCAGCCAGGUUCAAGUAAUCCAGGAUAGGCUGUGUCCAGCUGCAGGCCUAUUCUUGAUUACUUGUUUCUGGAGGCAGCUGACUGCACCCUGCCAGAAG

Get precursor sequence

Structure

        10          20        30        40        50         
CGGAAAGAUCCAGCAAA--|     AG     UU         C          GUGUCC 
                   GGCUGC  CCAGG  CAAGUAAUC AGGAUAGGCU      \
                   UCGACG  GGUCU  GUUCAUUAG UCUUAUCCGG      A
GAAGACCGUCCCACGUCAG^     GA     UU         U          ACGUCG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-26-P4_5p

mirBase accession

MIMAT0022828

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Sha-Mir-26-P4_3p*

mirBase accession

None

Sequence

37- CCUAUUCUUGAUUACUUGUUUC -59

Get sequence