MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-26-P4

Family name MIR-26 (all species)
Seed UCAAGUA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-26a
Paralogues Sha-Mir-26-P1  Sha-Mir-26-P2 
Orthologues Aca-Mir-26-P4  Ami-Mir-26-P4  Bta-Mir-26-P4  Cfa-Mir-26-P4  Cpi-Mir-26-P4  Cpo-Mir-26-P4  Dno-Mir-26-P4  Dre-Mir-26-P4  Ete-Mir-26-P4  Gga-Mir-26-P4  Gja-Mir-26-P4  Gmo-Mir-26-P4  Hsa-Mir-26-P4  Lch-Mir-26-P4  Loc-Mir-26-P4  Mal-Mir-26-P4  Mdo-Mir-26-P4  Mml-Mir-26-P4  Mmu-Mir-26-P4  Mun-Mir-26-P4  Oan-Mir-26-P4  Ocu-Mir-26-P4  Pbv-Mir-26-P4  Pma-Mir-26-o4  Rno-Mir-26-P4  Spt-Mir-26-P4  Sto-Mir-26-P4  Tgu-Mir-26-P4  Tni-Mir-26-P4  Xla-Mir-26-P4a  Xla-Mir-26-P4b  Xtr-Mir-26-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL861726.1: 615061-615119 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGGAAAGAUCCAGCAAAGGCUGCAGCCAGGUUCAAGUAAUCCAGGAUAGGCUGUGUCCAGCUGCAGGCCUAUUCUUGAUUACUUGUUUCUGGAGGCAGCUGACUGCACCCUGCCAGAAG
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Structure
        10          20        30        40        50         
CGGAAAGAUCCAGCAAA--|     AG     UU         C          GUGUCC 
                   GGCUGC  CCAGG  CAAGUAAUC AGGAUAGGCU      \
                   UCGACG  GGUCU  GUUCAUUAG UCUUAUCCGG      A
GAAGACCGUCCCACGUCAG^     GA     UU         U          ACGUCG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-26-P4_5p

mirBase accessionMIMAT0022828
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Sha-Mir-26-P4_3p*

mirBase accessionNone
Sequence
37- CCUAUUCUUGAUUACUUGUUUC -59
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