Mir-26-P4

MirGeneDB ID

Mdo-Mir-26-P4

Family name

MIR-26 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-26-1

Paralogues

Mdo-Mir-26-P1 Mdo-Mir-26-P2

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Tni-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

Un: 32096957-32097015 [-] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

ACAGCGAGAUGAGCCAAGGCUGCGGCCAGGUUCAAGUAAUCCAGGAUAGGCUGUGUCCAGCUGCGGGCCUAUCCUUGAUUGCUUGUUUCUGGAGGUGGCCCACUGCACCCUGCCAGAAG

Get precursor sequence

Structure

        10          20        30        40        50         
ACAGCGAGAUGAGCCAA--|  UG GG     UU         C          GUGUCC 
                   GGC  C  CCAGG  CAAGUAAUC AGGAUAGGCU      \
                   CCG  G  GGUCU  GUUCGUUAG UCCUAUCCGG      A
GAAGACCGUCCCACGUCAC^  GU GA     UU         U          GCGUCG 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-26-P4_5p

mirBase accession

MIMAT0012736

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-26-5p

Star sequence

Mdo-Mir-26-P4_3p*

mirBase accession

MIMAT0031031

Sequence

37- CCUAUCCUUGAUUGCUUGUUUC -59

Get sequence

Proposed targets

TargetScanVert: mdo-miR-26-1-3p