Mir-26-P4

MirGeneDB ID

Tni-Mir-26-P4

Family name

MIR-26 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-26

Paralogues

Tni-Mir-26-P1a Tni-Mir-26-P1b Tni-Mir-26-P2b

Orthologues

Aca-Mir-26-P4 Ami-Mir-26-P4 Bta-Mir-26-P4 Cfa-Mir-26-P4 Cja-Mir-26-P4 Cpi-Mir-26-P4 Cpo-Mir-26-P4 Dno-Mir-26-P4 Dre-Mir-26-P4 Eca-Mir-26-P4 Ete-Mir-26-P4 Gga-Mir-26-P4 Gja-Mir-26-P4 Gmo-Mir-26-P4 Hsa-Mir-26-P4 Laf-Mir-26-P4 Lch-Mir-26-P4 Loc-Mir-26-P4 Mal-Mir-26-P4 Mdo-Mir-26-P4 Mml-Mir-26-P4 Mmr-Mir-26-P4 Mmu-Mir-26-P4 Mun-Mir-26-P4 Neu-Mir-26-P4 Oan-Mir-26-P4 Ocu-Mir-26-P4 Pab-Mir-26-P4 Pbv-Mir-26-P4 Pma-Mir-26-o4 Rno-Mir-26-P4 Sha-Mir-26-P4 Spt-Mir-26-P4 Sto-Mir-26-P4 Tgu-Mir-26-P4 Xla-Mir-26-P4a Xla-Mir-26-P4b Xtr-Mir-26-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

Un_random: 52438987-52439046 [+] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

CCCGGGCUCCCGCGUUAGGCCUCGGCCUGGUUCAAGUAAUCCAGGAUAGGCUGGUUAACCCUGCACGGCCUAUUCUUGAUUACUUGUGUCAGGAAGUGGCCGCCAGCAGCAAACAGACGG

Get precursor sequence

Structure

        10          20        30        40        50         
CCCGGGCUCCCGCGUUA--|   UCGG     UU         C          GGUUAA 
                   GGCC    CCUGG  CAAGUAAUC AGGAUAGGCU      C
                   CCGG    GGACU  GUUCAUUAG UCUUAUCCGG      C
GGCAGACAAACGACGACCG^   UGAA     GU         U          CACGUC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

These are likely P2s - see if I can figure out what is going on with other fish.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-26-P4_5p

mirBase accession

MIMAT0003038

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Tni-Mir-26-P4_3p*

mirBase accession

None

Sequence

38- CCUAUUCUUGAUUACUUGUGUC -60

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