Mir-26-P1b

MirGeneDB ID

Tni-Mir-26-P1b

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-26-P1a Tni-Mir-26-P2b Tni-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1b Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1b Hsa-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Xtr-Mir-26-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

15: 2348349-2348409 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCGUCCUGAGAAGAAGGGCCGCGAUCCGGUUCAAGUAAUCCAGGAUAGGCUGUGUGUACGCAGGUUGGCCUAUUCGUGAUUACUUGCACUGGAAGGCAGCCGCCAGUCAAGCGCGUUUCC

Get precursor sequence

Structure

        10          20        30        40        50          
UCCGUCCUGAGAAGAAG--|  C  GA      U         CA         GUGUGUA 
                   GGC GC  UCCGGU CAAGUAAUC  GGAUAGGCU       \
                   CCG CG  AGGUCA GUUCAUUAG  CUUAUCCGG       C
CCUUUGCGCGAACUGACCG^  A  GA      C         UG         UUGGACG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-26-P1b_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Tni-Mir-26-P1b_3p*

mirBase accession

None

Sequence

39- CCUAUUCGUGAUUACUUGCACU -61

Get sequence