MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-26-P1

Family name MIR-26 (all species)
Seed UCAAGUA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-26-P2  Lch-Mir-26-P4 
Orthologues Aca-Mir-26-P1  Ami-Mir-26-P1  Bta-Mir-26-P1  Cfa-Mir-26-P1  Cli-Mir-26-P1  Cmi-Mir-26-P1  Cpi-Mir-26-P1  Cpo-Mir-26-P1  Dno-Mir-26-P1  Dre-Mir-26-P1a  Dre-Mir-26-P1b  Ete-Mir-26-P1  Gga-Mir-26-P1  Gja-Mir-26-P1  Gmo-Mir-26-P1a  Gmo-Mir-26-P1b  Hsa-Mir-26-P1  Loc-Mir-26-P1  Mal-Mir-26-P1a  Mal-Mir-26-P1b  Mdo-Mir-26-P1  Mml-Mir-26-P1  Mmu-Mir-26-P1  Mun-Mir-26-P1  Oan-Mir-26-P1  Ocu-Mir-26-P1  Pbv-Mir-26-P1  Pma-Mir-26-o1  Rno-Mir-26-P1  Sha-Mir-26-P1  Spt-Mir-26-P1  Sto-Mir-26-P1  Tgu-Mir-26-P1  Tni-Mir-26-P1a  Tni-Mir-26-P1b  Xla-Mir-26-P1c  Xla-Mir-26-P1d  Xtr-Mir-26-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH129281.1: 50980-51040 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCACAGAACAGAAGCAGCUGAGACCUGGUUCAAGUAGUCCAGGAUAGGCUGUGAGUUUUAGAAUUAGCCUGUUCUUGAUUACUUGCACUAGGGGGCAGCAUUGCACCACUGAUGGCAUG
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Structure
        10          20        30        40        50          
CAUCACAGAACAGAAGCA--|   AGA      U         C          GUGAGUU 
                    GCUG   CCUGGU CAAGUAGUC AGGAUAGGCU       \
                    CGAC   GGAUCA GUUCAUUAG UCUUGUCCGA       U
GUACGGUAGUCACCACGUUA^   GGG      C         U          UUAAGAU 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-26-P1_5p (predicted)

mirBase accessionNone
Sequence
0- UUCAAGUAGUCCAGGAUAGGCU -22
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Star sequence

Lch-Mir-26-P1_3p* (predicted)

mirBase accessionNone
Sequence
39- CCUGUUCUUGAUUACUUGCACU -61
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