Mir-26-P1a

MirGeneDB ID

Tni-Mir-26-P1a

Family name

MIR-26 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-26-P1b Tni-Mir-26-P2b Tni-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cja-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Eca-Mir-26-P1 Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Hsa-Mir-26-P1 Laf-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmr-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Neu-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pab-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tgu-Mir-26-P1 Xtr-Mir-26-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

6: 4014119-4014177 [+] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

CUGUUGGAAGCAGAAGUAGCCGUAACUGGGUUCAAGUAAUCCAGGAUAGGCUUGGUAUCUGUCUCGGCCUAUGCUUGAUUACUUGCACUUGGAGACGGCGACGUAACCACGGCAACCUG

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Structure

        10          20        30        40        50         
CUGUUGGAAGCAGAAGUA--|    AA UG   U         C  G       UGGUAU 
                    GCCGU  C  GGU CAAGUAAUC AG AUAGGCU      \
                    CGGCA  G  UCA GUUCAUUAG UC UAUCCGG      C
GUCCAACGGCACCAAUGCAG^    GA GU   C         U  G       CUCUGU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-26-P1a_5p

mirBase accession

None

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Star sequence

Tni-Mir-26-P1a_3p*

mirBase accession

None

Sequence

37- CCUAUGCUUGAUUACUUGCACU -59

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