Mir-26-P1

MirGeneDB ID

Tgu-Mir-26-P1

Family name

MIR-26 (all species)

Seed

UCAAGUA

Species

Zebra finch (Taeniopygia guttata)

MiRBase ID

tgu-mir-26-1

Paralogues

Tgu-Mir-26-P2 Tgu-Mir-26-P4

Orthologues

Aca-Mir-26-P1 Ami-Mir-26-P1 Bta-Mir-26-P1 Cfa-Mir-26-P1 Cli-Mir-26-P1 Cmi-Mir-26-P1 Cpi-Mir-26-P1 Cpo-Mir-26-P1 Dno-Mir-26-P1 Dre-Mir-26-P1a Dre-Mir-26-P1b Ete-Mir-26-P1 Gga-Mir-26-P1 Gja-Mir-26-P1 Gmo-Mir-26-P1a Gmo-Mir-26-P1b Hsa-Mir-26-P1 Lch-Mir-26-P1 Loc-Mir-26-P1 Mal-Mir-26-P1a Mal-Mir-26-P1b Mdo-Mir-26-P1 Mml-Mir-26-P1 Mmu-Mir-26-P1 Mun-Mir-26-P1 Oan-Mir-26-P1 Ocu-Mir-26-P1 Pbv-Mir-26-P1 Pma-Mir-26-o1 Rno-Mir-26-P1 Sha-Mir-26-P1 Spt-Mir-26-P1 Sto-Mir-26-P1 Tni-Mir-26-P1a Tni-Mir-26-P1b Xla-Mir-26-P1c Xla-Mir-26-P1d Xtr-Mir-26-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(TaeGut1_add)

2: 4609728-4609788 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGAUUUUCUUGCAGGAGGCUGUGGCCUGGUUCAAGUAAUCCAGGAUAGGCUGUAUCCAUUCUAACUCGCCUAUUCUUGGUUACUUGCACUGGGACAGGGCCACAACUGUGUGACCCAGGA

Get precursor sequence

Structure

        10          20        30        40        50          
UGGAUUUUCUUGCAGGA--|   G  G  UG  U         C         UGUAUCCA 
                   GGCU UG CC  GU CAAGUAAUC AGGAUAGGC        \
                   CCGG AC GG  CA GUUCAUUGG UCUUAUCCG        U
AGGACCCAGUGUGUCAACA^   G  A  GU  C         U         CUCAAUCU 
 .       110       100        90        80        70