Mir-26-P2d

MirGeneDB ID

Xtr-Mir-26-P2d

Family name

MIR-26 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-26-2

Paralogues

Xtr-Mir-26-P1 Xtr-Mir-26-P2c Xtr-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Rno-Mir-26-P2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2

Node of Origin (locus)

X. tropicalis

Node of Origin (family)

Vertebrata

Genome context
(xenTro9_add)

chr9: 77070820-77070880 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-26-P2d)

Mir-26-P2c chr9: 77064704-77064764 [+] UCSC Ensembl
Mir-26-P2d chr9: 77070820-77070880 [+] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

AGUGACGAGGAAUCCUGAUUGGGCGCUCGCUUCAAGUAAUCCAGGAUAGGCUGUAAUGUCUCCUGUCAGCCUUUUCUCGAUUACUUGGGACCAGAGCCAAUCUUUUUCAACGAAGGAACGC

Get precursor sequence

Structure

        10        20          30        40        50          
AGUGACGAGGAAUCCUGAUUG--|  G  CGC           C    U     GUAAUGU 
                       GGC CU   UUCAAGUAAUC AGGA AGGCU       \
                       CCG GA   GGGUUCAUUAG UCUU UCCGA       C
CGCAAGGAAGCAACUUUUUCUAA^  A  CCA           C    U     CUGUCCU 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-26-P2d_5p

mirBase accession

MIMAT0003569

Sequence

0- UUCAAGUAAUCCAGGAUAGGCU -22

Get sequence

Proposed targets

TargetScanVert: xtr-miR-26

Star sequence

Xtr-Mir-26-P2d_3p*

mirBase accession

None

Sequence

39- CCUUUUCUCGAUUACUUGGGAC -61

Get sequence