MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-26-P2

Family name MIR-26 (all species)
Seed UCAAGUA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-26b
Paralogues Rno-Mir-26-P1  Rno-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Dre-Mir-26-P2a  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Hsa-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mal-Mir-26-P2a  Mal-Mir-26-P2b  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2  Tni-Mir-26-P2b  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xtr-Mir-26-P2c  Xtr-Mir-26-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr9: 81675289-81675346 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCUCUUACCCCCACUGCCCGGGACCCAGUUCAAGUAAUUCAGGAUAGGUUGUGGUGCUGGCCAGCCUGUUCUCCAUUACUUGGCUCGGGGGCCGGUGCCCUGCAGCCUUGGGGUGA
Get precursor sequence
Structure
        10          20         30        40        50        
CCCCUCUUACCCCCACU-  -    GA   -|  U        UC          GUGGU 
                  GC CCGG  CCC AGU CAAGUAAU  AGGAUAGGUU     G
                  CG GGCC  GGG UCG GUUCAUUA  UCUUGUCCGA     C
AGUGGGGUUCCGACGUCC  U    GG   C^  -        CC          CCGGU 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-26-P2_5p

mirBase accessionMIMAT0000797
Sequence
0- UUCAAGUAAUUCAGGAUAGGUU -22
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Proposed targets microrna.org: MIMAT0000797
TargetScanVert: rno-miR-26b-5p
miRDB: MIMAT0000797
Star sequence

Rno-Mir-26-P2_3p*

mirBase accessionMIMAT0004714
Sequence
36- CCUGUUCUCCAUUACUUGGCUC -58
Get sequence
Proposed targets microrna.org: MIMAT0004714
TargetScanVert: rno-miR-26b-3p
miRDB: MIMAT0004714