Mir-26-P2

MirGeneDB ID

Rno-Mir-26-P2

Family name

MIR-26 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-26b

Paralogues

Rno-Mir-26-P1 Rno-Mir-26-P4

Orthologues

Aca-Mir-26-P2 Bta-Mir-26-P2 Cfa-Mir-26-P2 Cja-Mir-26-P2 Cli-Mir-26-P2 Cpi-Mir-26-P2 Cpo-Mir-26-P2 Dno-Mir-26-P2 Dre-Mir-26-P2a Eca-Mir-26-P2 Ete-Mir-26-P2 Gga-Mir-26-P2 Gja-Mir-26-P2 Gmo-Mir-26-P2a Gmo-Mir-26-P2b Hsa-Mir-26-P2 Laf-Mir-26-P2 Lch-Mir-26-P2 Loc-Mir-26-P2 Mal-Mir-26-P2a Mal-Mir-26-P2b Mdo-Mir-26-P2 Mml-Mir-26-P2 Mmr-Mir-26-P2 Mmu-Mir-26-P2 Mun-Mir-26-P2 Neu-Mir-26-P2 Oan-Mir-26-P2 Ocu-Mir-26-P2 Pab-Mir-26-P2 Pbv-Mir-26-P2 Pma-Mir-26-o2 Sha-Mir-26-P2 Spt-Mir-26-P2 Sto-Mir-26-P2 Tgu-Mir-26-P2 Tni-Mir-26-P2b Xla-Mir-26-P2e Xla-Mir-26-P2f Xtr-Mir-26-P2c Xtr-Mir-26-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr9: 81675289-81675346 [+] UCSC Ensembl

Seed

UCAAGUA

Precursor
(pre-Mir +30nt flank)

CCCCUCUUACCCCCACUGCCCGGGACCCAGUUCAAGUAAUUCAGGAUAGGUUGUGGUGCUGGCCAGCCUGUUCUCCAUUACUUGGCUCGGGGGCCGGUGCCCUGCAGCCUUGGGGUGA

Get precursor sequence

Structure

        10          20         30        40        50        
CCCCUCUUACCCCCACU-  -    GA   -|  U        UC          GUGGU 
                  GC CCGG  CCC AGU CAAGUAAU  AGGAUAGGUU     G
                  CG GGCC  GGG UCG GUUCAUUA  UCUUGUCCGA     C
AGUGGGGUUCCGACGUCC  U    GG   C^  -        CC          CCGGU 
      110       100        90         80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-26-P2_5p

mirBase accession

MIMAT0000797

Sequence

0- UUCAAGUAAUUCAGGAUAGGUU -22

Get sequence

Proposed targets

microrna.org: MIMAT0000797
TargetScanVert: rno-miR-26b-5p
miRDB: MIMAT0000797

Star sequence

Rno-Mir-26-P2_3p*

mirBase accession

MIMAT0004714

Sequence

36- CCUGUUCUCCAUUACUUGGCUC -58

Get sequence

Proposed targets

microrna.org: MIMAT0004714
TargetScanVert: rno-miR-26b-3p
miRDB: MIMAT0004714