MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-26-P2

Family name MIR-26 (all species)
Seed UCAAGUA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-26-P1  Spt-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Dre-Mir-26-P2a  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Gmo-Mir-26-P2a  Gmo-Mir-26-P2b  Hsa-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mal-Mir-26-P2a  Mal-Mir-26-P2b  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2  Tni-Mir-26-P2b  Xla-Mir-26-P2e  Xla-Mir-26-P2f  Xtr-Mir-26-P2c  Xtr-Mir-26-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01004877.1: 328795-328855 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUCAACGCCUCUGGAGGCCGCGGCCGGGUUCAAGUAAUCCAGGAUAGGCUGUGGGCUCGGCAUUCGGCCUGUUCUUGAUUACUUGGUCCUGGAGGCGGCCAGCAGCUUCGCACGGAGAC
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Structure
        10          20        30        40        50          
AGAUCAACGCCUCUGGA--|     GG     UU         C          GUGGGCU 
                   GGCCGC  CCGGG  CAAGUAAUC AGGAUAGGCU       \
                   CCGGCG  GGUCC  GUUCAUUAG UCUUGUCCGG       C
CAGAGGCACGCUUCGACGA^     GA     UG         U          CUUACGG 
 .       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Spt-Mir-26-P2_5p (predicted)

mirBase accessionNone
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Star sequence

Spt-Mir-26-P2_3p* (predicted)

mirBase accessionNone
Sequence
39- CCUGUUCUUGAUUACUUGGUCC -61
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