MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-26-P2a

Family name MIR-26 (all species)
Seed UCAAGUA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-26a-1
Paralogues Dre-Mir-26-P1a  Dre-Mir-26-P1b  Dre-Mir-26-P4 
Orthologues Aca-Mir-26-P2  Bta-Mir-26-P2  Cfa-Mir-26-P2  Cli-Mir-26-P2  Cpi-Mir-26-P2  Cpo-Mir-26-P2  Dno-Mir-26-P2  Ete-Mir-26-P2  Gga-Mir-26-P2  Gja-Mir-26-P2  Gmo-Mir-26-P2a  Hsa-Mir-26-P2  Lch-Mir-26-P2  Loc-Mir-26-P2  Mal-Mir-26-P2a  Mdo-Mir-26-P2  Mml-Mir-26-P2  Mmu-Mir-26-P2  Mun-Mir-26-P2  Oan-Mir-26-P2  Ocu-Mir-26-P2  Pbv-Mir-26-P2  Pma-Mir-26-o2  Rno-Mir-26-P2  Sha-Mir-26-P2  Spt-Mir-26-P2  Sto-Mir-26-P2  Tgu-Mir-26-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr9: 41733543-41733602 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACAUCUGACAGACAAGGCUUUGGCCUGGUUCAAGUAAUCCAGGAUAGGCUUGUGAUGUCCGGAAAGCCUAUUCGGGAUGACUUGGUUCAGGAAUGAGACCACCAGCAUCAUAAACGAG
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Structure
        10          20        30        40        50         
GGACAUCUGACAGACAA-  -|  UGG     UU     A    A         UGUGAU 
                  GG CUU   CCUGG  CAAGU AUCC GGAUAGGCU      G
                  CC GAG   GGACU  GUUCA UAGG CUUAUCCGA      U
GAGCAAAUACUACGACCA  A^  UAA     UG     G    G         AAGGCC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-26-P2a_5p

mirBase accessionMIMAT0001794
Sequence
0- UUCAAGUAAUCCAGGAUAGGCU -22
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Proposed targets TargetScanFish: dre-miR-26a
Star sequence

Dre-Mir-26-P2a_3p*

mirBase accessionMIMAT0031947
Sequence
38- CCUAUUCGGGAUGACUUGGUUC -60
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